DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gpdh1 and gpd1

DIOPT Version :9

Sequence 1:NP_001260112.1 Gene:Gpdh1 / 33824 FlyBaseID:FBgn0001128 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001006808.1 Gene:gpd1 / 448519 XenbaseID:XB-GENE-1003323 Length:348 Species:Xenopus tropicalis


Alignment Length:348 Identity:234/348 - (67%)
Similarity:274/348 - (78%) Gaps:4/348 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VNVCIVGSGNWGSAIAKIVGANAAALPEFEERVTMFVYEELIDGKKLTEIINETHENVKYLKGHK 69
            :.||||||||||||||||||.|||.||:|:..|.|:|:||||.|||||||||..|||||||.|||
 Frog     3 LKVCIVGSGNWGSAIAKIVGDNAARLPQFDNVVKMWVFEELIGGKKLTEIINSDHENVKYLPGHK 67

  Fly    70 LPPNVVAVPDLVEAAKNADILIFVVPHQFIPNFCKQLLGKIKPNAIAISLIKGFDKAEG-GGIDL 133
            ||.||||||||:||:..|||||||||||||...|.||...:|..|..:|||||.|  || .|:.|
 Frog    68 LPANVVAVPDLLEASAGADILIFVVPHQFIGKLCDQLKAHVKKEAFGMSLIKGVD--EGPEGLRL 130

  Fly   134 ISHIITRHLKIPCAVLMGANLANEVAEGNFCETTIGCTDKKYGKVLRDLFQANHFRVVVVDDADA 198
            ||.||...|.|..:||||||:|||||:|.||||||||.:|::||:|::|||..:||:.||::.|.
 Frog   131 ISDIIQERLGIQMSVLMGANIANEVADGKFCETTIGCKNKEHGKILKELFQTPNFRITVVEEKDT 195

  Fly   199 VEVCGALKNIVACGAGFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLS-TFFESCGVADL 262
            ||:|||||||||.||||.|||..|||||||||||||||||.|..:|..||..| ||.||||||||
 Frog   196 VEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGSVTSATFLESCGVADL 260

  Fly   263 ITTCYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTAIH 327
            ||||||||||:|.|||..:||:||:||:|||||||||||.|:.|:|::||||.|..|||||||::
 Frog   261 ITTCYGGRNRKVGEAFARTGKSIEQLEQEMLNGQKLQGPQTSAELNHILKNKNLVGKFPLFTAVY 325

  Fly   328 KICTNQLKPNDLIDCIRNHPEHM 350
            :||.......:.|.|::||||||
 Frog   326 QICYEGKPVTEFITCLQNHPEHM 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpdh1NP_001260112.1 glycerol3P_DH 6..343 CDD:274551 227/338 (67%)
gpd1NP_001006808.1 glycerol3P_DH 4..341 CDD:274551 227/338 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 223 1.000 Domainoid score I2508
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5593
Inparanoid 1 1.050 434 1.000 Inparanoid score I1663
OMA 1 1.010 - - QHG56883
OrthoDB 1 1.010 - - D346303at33208
OrthoFinder 1 1.000 - - FOG0000846
OrthoInspector 1 1.000 - - otm48799
Panther 1 1.100 - - LDO PTHR11728
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X660
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

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