DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gpdh1 and gpd1c

DIOPT Version :9

Sequence 1:NP_001260112.1 Gene:Gpdh1 / 33824 FlyBaseID:FBgn0001128 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_999918.1 Gene:gpd1c / 406615 ZFINID:ZDB-GENE-040426-2576 Length:349 Species:Danio rerio


Alignment Length:346 Identity:219/346 - (63%)
Similarity:259/346 - (74%) Gaps:4/346 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VCIVGSGNWGSAIAKIVGANAAALPEFEERVTMFVYEELIDGKKLTEIINETHENVKYLKGHKLP 71
            |||:||||||||||||||.|..:...||..|.|:||||:|||:|||||||..|||||||.|||||
Zfish     6 VCIIGSGNWGSAIAKIVGHNVKSSNRFEPLVKMWVYEEMIDGRKLTEIINTEHENVKYLPGHKLP 70

  Fly    72 PNVVAVPDLVEAAKNADILIFVVPHQFIPNFCKQLLGKIKPNAIAISLIKGFDKAEG-GGIDLIS 135
            ..||||||:.|||..||.||||:|||||...|.|:...|||.||.||||||.|  || .|:.|||
Zfish    71 KTVVAVPDVTEAASGADFLIFVIPHQFIVRVCDQMKPHIKPGAIGISLIKGID--EGPDGLTLIS 133

  Fly   136 HIITRHLKIPCAVLMGANLANEVAEGNFCETTIGCTDKKYGKVLRDLFQANHFRVVVVDDADAVE 200
            .||...|:|...||||||:|:|||:..|||||||.|::..||:.::|.|..:||:.||.::|.||
Zfish   134 DIIRAKLEIEVCVLMGANIASEVADEKFCETTIGATNEASGKLFKELLQTPNFRITVVKESDTVE 198

  Fly   201 VCGALKNIVACGAGFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLS-TFFESCGVADLIT 264
            :|||||||||.||||.|||..||||||||||||||||:.|..:|...|..| ||.||||||||||
Zfish   199 LCGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMVAFSKLFCKSSVSSATFLESCGVADLIT 263

  Fly   265 TCYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTAIHKI 329
            ||||||||||:|||..:.|:|.|||.|||||||||||.|:.||..:|..:.:.||||||.::::|
Zfish   264 TCYGGRNRRVAEAFARTQKSIVELEAEMLNGQKLQGPQTSAEVYKILHKRNITDKFPLFVSVYQI 328

  Fly   330 CTNQLKPNDLIDCIRNHPEHM 350
            |....:..|.|:|::||||||
Zfish   329 CFEGRQVKDFINCLQNHPEHM 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpdh1NP_001260112.1 glycerol3P_DH 6..343 CDD:274551 212/337 (63%)
gpd1cNP_999918.1 glycerol3P_DH 5..342 CDD:274551 212/337 (63%)
NAD_Gly3P_dh_N 5..172 CDD:279543 110/167 (66%)
NAD_Gly3P_dh_C 196..336 CDD:284817 91/139 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596724
Domainoid 1 1.000 222 1.000 Domainoid score I2519
eggNOG 1 0.900 - - E1_COG0240
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 454 1.000 Inparanoid score I1567
OMA 1 1.010 - - QHG56883
OrthoDB 1 1.010 - - D346303at33208
OrthoFinder 1 1.000 - - FOG0000846
OrthoInspector 1 1.000 - - otm25442
orthoMCL 1 0.900 - - OOG6_100385
Panther 1 1.100 - - O PTHR11728
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X660
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.810

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