back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Gpdh1 and gpd1l

DIOPT Version :9

Sequence 1:	NP_001260112.1	Gene:	Gpdh1 / 33824	FlyBaseID:	FBgn0001128	Length:	360	Species:	Drosophila melanogaster
Sequence 2:	NP_989027.1	Gene:	gpd1l / 394623	XenbaseID:	XB-GENE-969902	Length:	352	Species:	Xenopus tropicalis

Alignment Length:	352	Identity:	220/352 - (62%)
Similarity:	272/352 - (77%)	Gaps:	4/352 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MADKVNVCIVGSGNWGSAIAKIVGANAAALPEFEERVTMFVYEELIDGKKLTEIINETHENVKYL 65
            :|..:.||||||||||||:|||:|.|...|.:|...|.|:|:||.|:|:|||||||..|||||||
Frog     3 LAGPLKVCIVGSGNWGSAVAKIIGHNVKNLKKFASTVNMWVFEENINGRKLTEIINTEHENVKYL 67

  Fly    66 KGHKLPPNVVAVPDLVEAAKNADILIFVVPHQFIPNFCKQLLGKIKPNAIAISLIKGFDKAEG-G 129
            .|:|||.||||||:|.:|.|:||:||||:|||||...|:::.||:..||:.|:||||.|  || .
Frog    68 PGYKLPENVVAVPNLSDAVKDADLLIFVIPHQFIHKICQEISGKVHRNALGITLIKGID--EGPE 130

  Fly   130 GIDLISHIITRHLKIPCAVLMGANLANEVAEGNFCETTIGCTDKKYGKVLRDLFQANHFRVVVVD 194
            |:.|||.||...:.|..:||||||:|||||...|||||||..:|::|.:.::|.|..:||:.||:
Frog   131 GLRLISDIIREKMDIDVSVLMGANIANEVAAEKFCETTIGSKNKEHGLLFKELLQTPNFRITVVE 195

  Fly   195 DADAVEVCGALKNIVACGAGFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGS-KLSTFFESCG 258
            |||.||:|||||||||..|||.|||..|||||||||||||||||.|.:||..|. .::||.||||
Frog   196 DADTVELCGALKNIVAVAAGFCDGLGCGDNTKAAVIRLGLMEMIAFANVFCKGPVSIATFLESCG 260

  Fly   259 VADLITTCYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLF 323
            ||||||||||||||:||||||.|||:|||||||||||||||||.|:.||..:|:.|.:.:|||||
Frog   261 VADLITTCYGGRNRKVSEAFVKSGKSIEELEKEMLNGQKLQGPQTSAEVYRILQQKNMVNKFPLF 325

  Fly   324 TAIHKICTNQLKPNDLIDCIRNHPEHM 350
            ||:::||.......|:|.|:::|||||
Frog   326 TAVYQICYEGKPVEDVISCLQSHPEHM 352

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.