DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gpdh1 and gpd2

DIOPT Version :9

Sequence 1:NP_001260112.1 Gene:Gpdh1 / 33824 FlyBaseID:FBgn0001128 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_594542.1 Gene:gpd2 / 2541502 PomBaseID:SPAC23D3.04c Length:373 Species:Schizosaccharomyces pombe


Alignment Length:350 Identity:175/350 - (50%)
Similarity:238/350 - (68%) Gaps:12/350 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VNVCIVGSGNWGSAIAKIVGANAAALPE-FEERVTMFVYEELI--DGKK--LTEIINETHENVKY 64
            ::|.|:||||||:|||||.|.||.|.|: |..:|.|::|||.|  :||:  |||:.|.|||||||
pombe    25 ISVGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFNTTHENVKY 89

  Fly    65 LKGHKLPPNVVAVPDLVEAAKNADILIFVVPHQFIPNFCKQLLGKIKPNAIAISLIKGFDKAEGG 129
            |||.|.|.||.|.||:.:....:|||::|:||||:...|.||.|.:|.:|:|||.|||....: .
pombe    90 LKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAISCIKGVSVTK-D 153

  Fly   130 GIDLISHIITRHLKIPCAVLMGANLANEVAEGNFCETTIG-----CTDKKY-GKVLRDLFQANHF 188
            .:.|.|.||..:..:.|.||.|||:|:|||:..|||||||     ..:.:| .|.::.||...:|
pombe   154 RVRLFSDIIEENTGMYCGVLSGANIASEVAQEKFCETTIGYLPNSSVNPRYTPKTIQALFNRPYF 218

  Fly   189 RVVVVDDADAVEVCGALKNIVACGAGFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLSTF 253
            ||.:|:|...|.:.||||||||..||.:|||:||||||:||:|:||:||.:|..:|:....|:..
pombe   219 RVNIVEDVPGVALGGALKNIVAVAAGIIDGLELGDNTKSAVMRIGLLEMQKFGRMFFDCKPLTMS 283

  Fly   254 FESCGVADLITTCYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLED 318
            .||||:|||||||.||||.:.:.|||.:||.:..:|:|:|:||||||..||:||...|.|:....
pombe   284 EESCGIADLITTCLGGRNHKCAVAFVKTGKPMHVVEQELLDGQKLQGAATAKEVYEFLDNQNKVS 348

  Fly   319 KFPLFTAIHKICTNQLKPNDLIDCI 343
            :||||||:::|....|.||.|::.|
pombe   349 EFPLFTAVYRIVYEGLPPNKLLEAI 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpdh1NP_001260112.1 glycerol3P_DH 6..343 CDD:274551 174/347 (50%)
gpd2NP_594542.1 glycerol3P_DH 26..373 CDD:274551 174/347 (50%)
NAD_Gly3P_dh_N 26..194 CDD:279543 88/168 (52%)
NAD_Gly3P_dh_C 226..367 CDD:284817 73/140 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 178 1.000 Domainoid score I824
eggNOG 1 0.900 - - E1_COG0240
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5593
Inparanoid 1 1.050 326 1.000 Inparanoid score I535
OMA 1 1.010 - - QHG56883
OrthoFinder 1 1.000 - - FOG0000846
OrthoInspector 1 1.000 - - mtm9285
orthoMCL 1 0.900 - - OOG6_100385
Panther 1 1.100 - - O PTHR11728
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R508
SonicParanoid 1 1.000 - - X660
TreeFam 1 0.960 - -
1413.860

Return to query results.
Submit another query.