DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gpdh1 and gpdh-2

DIOPT Version :9

Sequence 1:NP_001260112.1 Gene:Gpdh1 / 33824 FlyBaseID:FBgn0001128 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_871632.1 Gene:gpdh-2 / 176399 WormBaseID:WBGene00010778 Length:392 Species:Caenorhabditis elegans


Alignment Length:355 Identity:217/355 - (61%)
Similarity:272/355 - (76%) Gaps:11/355 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VCIVGSGNWGSAIAKIVGANAAALP-EFEERVTMFVYEELIDGKKLTEIINETHENVKYLKGHKL 70
            |.|:||||||||||:|||:...:.| ||:..|.|:|:||:::|:||:|:||..|||:|||.|..|
 Worm    38 VTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHENIKYLPGKVL 102

  Fly    71 PPNVVAVPDLVEAAKNADILIFVVPHQFIPNFCKQLLGKIKPNAIAISLIKG--FDKA------- 126
            |.|||||.||||:.:.:::|:|||||||:...|::|:|||..:..|||||||  |||.       
 Worm   103 PNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVGKIPADTQAISLIKGISFDKTNQGVSTE 167

  Fly   127 EGGGIDLISHIITRHLKIPCAVLMGANLANEVAEGNFCETTIGCTDK-KYGKVLRDLFQANHFRV 190
            :.||:.|||..|...|||..:||||||||.|||..||||.||||..| :.|.:|:.||..::||:
 Worm   168 KRGGLKLISEEIKEILKIEVSVLMGANLAPEVANDNFCEATIGCKRKAEDGPLLKKLFHTDNFRI 232

  Fly   191 VVVDDADAVEVCGALKNIVACGAGFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLSTFFE 255
            .||:||..||:||||||:|||.|||.|||..|||||||||||||||..:||:.:||||.|.||||
 Worm   233 NVVEDAHTVELCGALKNVVACAAGFTDGLGYGDNTKAAVIRLGLMETTKFVEHYYPGSNLQTFFE 297

  Fly   256 SCGVADLITTCYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKF 320
            |||:|||||||||||||:|.||||.:||::.|:|||:||||..|||.|||||..|:...||:.||
 Worm   298 SCGIADLITTCYGGRNRKVCEAFVKTGKSMAEVEKELLNGQSAQGPLTAEEVYLMMHKTGLDAKF 362

  Fly   321 PLFTAIHKICTNQLKPNDLIDCIRNHPEHM 350
            |||||:||||..::||.:|:||:|||||||
 Worm   363 PLFTAVHKICAGEMKPAELVDCLRNHPEHM 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpdh1NP_001260112.1 glycerol3P_DH 6..343 CDD:274551 209/346 (60%)
gpdh-2NP_871632.1 glycerol3P_DH 37..385 CDD:274551 209/346 (60%)
NAD_Gly3P_dh_N 37..217 CDD:279543 99/178 (56%)
NAD_Gly3P_dh_C 240..378 CDD:284817 96/137 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167792
Domainoid 1 1.000 215 1.000 Domainoid score I1567
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5593
Inparanoid 1 1.050 434 1.000 Inparanoid score I953
Isobase 1 0.950 - 0 Normalized mean entropy S475
OMA 1 1.010 - - QHG56883
OrthoDB 1 1.010 - - D346303at33208
OrthoFinder 1 1.000 - - FOG0000846
OrthoInspector 1 1.000 - - oto18051
orthoMCL 1 0.900 - - OOG6_100385
Panther 1 1.100 - - LDO PTHR11728
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R508
SonicParanoid 1 1.000 - - X660
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.890

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