DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dsf and NR1I2

DIOPT Version :9

Sequence 1:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_071285.1 Gene:NR1I2 / 8856 HGNCID:7968 Length:473 Species:Homo sapiens


Alignment Length:680 Identity:127/680 - (18%)
Similarity:195/680 - (28%) Gaps:301/680 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKC 77
            |:||||:::|.|:.:.:|:||.|||:|::.||....|...   ||.|.:.:..|.||:||||.||
Human    80 CRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNARLRCPFR---KGACEITRKTRRQCQACRLRKC 141

  Fly    78 FQSAMNK------DAVQHERGPRKPKLHPQLHHHHHHAAAAAAAAHHAAAAHHHHHHHHHAHAAA 136
            .:|.|.|      :||:..|...|.|                                      .
Human   142 LESGMKKEMIMSDEAVEERRALIKRK--------------------------------------K 168

  Fly   137 AHHAAVAAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPPAPAAPPSGFHLTASGAQQGPA 201
            :...........||......|...|:.....:|:.|                             
Human   169 SERTGTQPLGVQGLTEEQRMMIRELMDAQMKTFDTT----------------------------- 204

  Fly   202 PPAGHLHHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSSAISGSGPGSTLPFPSHLLHHN 266
                        ..|...|..|           ||:|         ||.....:|..||.     
Human   205 ------------FSHFKNFRLP-----------GVLS---------SGCELPESLQAPSR----- 232

  Fly   267 LIAEAASKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNYSSPSPSNSIQSISSIGSRSGG 331
               |.|:|...:.....:..||         .|......:..||..|:.|              |
Human   233 ---EEAAKWSQVRKDLCSLKVS---------LQLRGEDGSVWNYKPPADS--------------G 271

  Fly   332 GEEGLSLGSESPRVNVETETPSPSN-SPPLSAGSISPAPTLTTSSGSPQHRQMSRHSLSEATTPP 395
            |:|..||            .|..:: |..:..|.||.|..::.....|...|:   ||.:.    
Human   272 GKEIFSL------------LPHMADMSTYMFKGIISFAKVISYFRDLPIEDQI---SLLKG---- 317

  Fly   396 SHASLMICASNNNNNNNNNNNNGEHKQSSYTSGSPTPTTPTPPPPRSGVGSTCNTASSSSGFLEL 460
              |:..:|....|...|......|..:.||                      | ...::.||.:|
Human   318 --AAFELCQLRFNTVFNAETGTWECGRLSY----------------------C-LEDTAGGFQQL 357

  Fly   461 LLSPDKCQELIQYQVQHNTLLFPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKND 525
            ||.|                                                  ::.|..:.|. 
Human   358 LLEP--------------------------------------------------MLKFHYMLKK- 371

  Fly   526 QHLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQITPD 590
              |.|.|                            .|.||                         
Human   372 --LQLHE----------------------------EEYVL------------------------- 381

  Fly   591 GSEVGCMKAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATR--FGRLLLLLPSLR 653
                  |:||:||:|:..|:...:.|:.||:|....|..::....|:.|.|  |.:::.:|..||
Human   382 ------MQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELR 440

  Fly   654 TIRAATIEALFFKETIGNVPIAR-LLRDMY 682
            :|.|...:.|...:.|.  |.|. |:::::
Human   441 SINAQHTQRLLRIQDIH--PFATPLMQELF 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 36/90 (40%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748 31/205 (15%)
NR1I2NP_071285.1 NR_DBD_PXR 79..166 CDD:143536 35/88 (40%)
NR_LBD_PXR_like 182..467 CDD:132732 89/534 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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