DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dsf and esrra

DIOPT Version :9

Sequence 1:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001072756.1 Gene:esrra / 780213 XenbaseID:XB-GENE-485432 Length:408 Species:Xenopus tropicalis


Alignment Length:685 Identity:119/685 - (17%)
Similarity:178/685 - (25%) Gaps:355/685 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLDIP---CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQC 69
            |..||   |.||||.:||.|||:.||:.|..||||:|..|..|:|.|:.:    |.:.|..|..|
 Frog    62 LNSIPKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNE----CEITKRRRKAC 122

  Fly    70 RACRLAKCFQSAMNKDAVQHER---GPRKPKLHPQLHHHHHHAAAAAAAAHHAAAAHHHHHHHHH 131
            :|||..||.:..|.|:.|:.:|   |.:|.|..|:                              
 Frog   123 QACRFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPE------------------------------ 157

  Fly   132 AHAAAAHHAAVAAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPPAPAAPPSGFHLTASGA 196
                                              .....||                     || 
 Frog   158 ----------------------------------GEILQYT---------------------SG- 166

  Fly   197 QQGPAPPAGHLHHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSSAISGSGPGSTLPFPSH 261
              |||..|.           ||....       ..|...|||                       
 Frog   167 --GPAQQAS-----------ATVVKK-------QTPVNAVVS----------------------- 188

  Fly   262 LLHHNLIAEAASKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNYSSPSPSNSIQSISSIG 326
               |.|:|| ..||                                  ::.|.|:          
 Frog   189 ---HLLVAE-PDKL----------------------------------FAMPDPA---------- 205

  Fly   327 SRSGGGEEGLSLGSESPRVNVETETPSPSNSPPLSAGSISPAPTLTTSSGSPQHRQMSRHSLSEA 391
                                                                             
 Frog   206 ----------------------------------------------------------------- 205

  Fly   392 TTPPSHASLMICASNNNNNNNNNNNNGEHKQSSYTSGSPTPTTPTPPPPRSGVGSTCNTASSSSG 456
                                                                             
 Frog   206 ----------------------------------------------------------------- 205

  Fly   457 FLELLLSPDKCQELIQYQVQHNTLLFPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTL 521
                                         |.|..|.|...|.:...|.:.:.:.|.|.:..|.:|
 Frog   206 -----------------------------LPDGYLKSMSTLCDLADREIVIIISWAKNIPGFSSL 241

  Fly   522 SKNDQHLLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEMKT-----IQEIL 581
            |.:||..|||..|.|:.||.:...::|.:    .|.....:.||.:|::::...|     |..::
 Frog   242 SLSDQMSLLQSVWMEVLLLGVVFRSLPYE----DEVVFAEDFVLDEESSRSARLTDLCSCILHLV 302

  Fly   582 CRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLL 646
            .::|.:..:..|...:||:.|...::..:.|...|..|:|..|..||::...|:|.:..|.|:||
 Frog   303 RKYRTLRVEKEEYVMLKALTLTNSDSVHIEDPDAVLRLRDALQEALSEYESGRHPEEPCRDGKLL 367

  Fly   647 LLLPSLRTIRAATIEALFFKETIGNVPIARLLRDM 681
            |.||.||......::........|.||:.:|..:|
 Frog   368 LTLPLLRQTAGRVLQHFHALREEGAVPMHKLFLEM 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 40/95 (42%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748 50/208 (24%)
esrraNP_001072756.1 NR_DBD_ERR 64..160 CDD:143544 41/163 (25%)
NR_LBD_ERR 186..405 CDD:132744 66/451 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.