DRSC/TRiP Functional Genomics Resources

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Protein Alignment dsf and RARG

DIOPT Version :9

Sequence 1:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster
Sequence 2:XP_024304880.1 Gene:RARG / 5916 HGNCID:9866 Length:541 Species:Homo sapiens


Alignment Length:102 Identity:46/102 - (45%)
Similarity:65/102 - (63%) Gaps:15/102 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAK 76
            ||.||.|:|||.|||:.||:||.|||:|||.:|.:|||....:    |.::|..||:|:.|||.|
Human   176 PCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQYCRLQK 236

  Fly    77 CFQSAMNKDAVQHERGPRKP-----------KLHPQL 102
            ||:..|:|:||:::|..:|.           :|.|||
Human   237 CFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQL 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 42/96 (44%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748
RARGXP_024304880.1 NR_DBD_RAR 172..252 CDD:143522 40/79 (51%)
NR_LBD_RAR 275..505 CDD:132735
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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