DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dsf and hnf4g

DIOPT Version :9

Sequence 1:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster
Sequence 2:XP_021325864.1 Gene:hnf4g / 557104 ZFINID:ZDB-GENE-060929-100 Length:459 Species:Danio rerio


Alignment Length:678 Identity:122/678 - (17%)
Similarity:180/678 - (26%) Gaps:357/678 - (52%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQC 69
            |:..:...|.:|||:::|||||..|||||.|||:|||.::.:|:|:    ...:|.|||..||||
Zfish    54 GENGVSSNCAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FNRQCVVDKDKRNQC 114

  Fly    70 RACRLAKCFQSAMNKDAVQHERGPRKPKLHPQLHHHHHHAAAAAAAAHHAAAAHHHHHHHHHAHA 134
            |.|||.|||::.|.|:|||:||.                                          
Zfish   115 RFCRLHKCFRAGMKKEAVQNERD------------------------------------------ 137

  Fly   135 AAAHHAAVAAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPPAPAAPPSGFHLTASGAQQG 199
                                   .:|...|:..|.:                             
Zfish   138 -----------------------RISSRRNIQDSHD----------------------------- 150

  Fly   200 PAPPAGHLHHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSSAISGSGPGSTLPFPSHLLH 264
                                                                             
Zfish   151 ----------------------------------------------------------------- 150

  Fly   265 HNLIAEAASKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNYSSPSPSNSIQSISSIGSRS 329
                      ||.|||.|.|..:|......||                                 
Zfish   151 ----------LPPITALAHAEALSQQQITAAS--------------------------------- 172

  Fly   330 GGGEEGLSLGSESPRVNVETETPSPSNSPPLSAGSISPAPTLTTSSGSPQHRQMSRHSLSEATTP 394
                                         |:....:|...:.|.|                    
Zfish   173 -----------------------------PMGPADVSEKKSATIS-------------------- 188

  Fly   395 PSHASLMICASNNNNNNNNNNNNGEHKQSSYTSGSPTPTTPTPPPPRSGVGSTCNTASSSSGFLE 459
                                                                             
Zfish   189 ----------------------------------------------------------------- 188

  Fly   460 LLLSPDKCQELIQYQVQHNTLLFPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKN 524
                 |.|:.:            .||||                   :.|.|.|.:..|..|..:
Zfish   189 -----DVCESM------------KQQLL-------------------VLVEWAKYIPAFGELPLD 217

  Fly   525 DQHLLLQESWKELFLLNLAQWTIPL-DLTPILESPLIRERVLQDEATQTEMKTIQEILCRFRQIT 588
            ||..||:....|..||.:|:.::.. ||..:....:|.....:.|..:...:.:.|::..|:.|.
Zfish   218 DQVSLLRAHAGEHLLLGVAKRSMSYKDLLLLGNGCVIHRNCPEPEIGRVSNRVLDELVLPFQDIQ 282

  Fly   589 PDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLR 653
            .|.:|...:|||..|.|:...|.|...::.::.|.|..|.|::..|......|||.||||||:|:
Zfish   283 IDDNEYAALKAIVFFDPDAKSLRDPSKIKAMRYQVQMSLEDYINDRQYDSRGRFGELLLLLPTLQ 347

  Fly   654 TIRAATIEALFFKETIGNVPIARLLRDM 681
            :|....||.|.|.:..|...|..||::|
Zfish   348 SITWQMIEQLQFIKLFGLAKIDNLLQEM 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 45/92 (49%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748 54/204 (26%)
hnf4gXP_021325864.1 NR_DBD_HNF4A 62..137 CDD:143518 43/78 (55%)
NR_LBD_HNF4_like 154..375 CDD:132729 71/403 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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