Protein Alignment dsf and rxraa

DIOPT Version :10

• Sequence 1: NP_477140.1
• Gene: dsf / 33823
• FlyBaseID: FBgn0015381
• Length: 691
• Species: Drosophila melanogaster
• Sequence 2: XP_005161240.1
• Gene: rxraa / 555578
• ZFINID: ZDB-GENE-070314-2
• Length: 500
• Species: Danio rerio
• Alignment Length: 679
• Identity: 122/679 - (17%)
• Similarity: 186/679 - (27%)
• Gaps: 364/679 - (53%)

  Fly    13 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKC 77
            |.:|||||||||||:|||:||.|||||::.::..|||:...|    |.:||..||:|:.||..||
Zfish   168 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYCRYQKC 228

  Fly    78 FQSAMNKD-----AVQHERGPRKPKLHPQLHHHHHHAAAAAAAAHHAAAAHHHHHHHHHAHAAAA 137
            ....|.::     |||.||...|.:                                       :
Zfish   229 LAMGMKREVLLHTAVQEERQRAKER---------------------------------------S 254

  Fly   138 HHAAVAAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPPAPAAPPSGFHLTASGAQQGPAP 202
            .:...:.::|      :..|||..:..
Zfish   255 ENEVESTSSA------NEDMPVEKILE-------------------------------------- 275

  Fly   203 PAGHLHHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSSAISGSGPGSTLPFPSHLLHHNL 267
                                                                             
Zfish   276 ----------------------------------------------------------------- 275

  Fly   268 IAEAASKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNYSSPSPSNSIQSISSIGSRSGGG 332
                          |..||...|.|
Zfish   276 --------------AELAVEPKTET---------------------------------------- 286

  Fly   333 EEGLSLGSESPRVNVETETPSPSNSPPLSAGSISPAPTLTTSSGSPQHRQMSRHSLSEATTPPSH 397
                         .:||..|.||||
Zfish   287 -------------YIETNVPMPSNS---------------------------------------- 298

  Fly   398 ASLMICASNNNNNNNNNNNNGEHKQSSYTSGSPTPTTPTPPPPRSGVGSTCNTASSSSGFLELLL 462
                                                      |...|.:.|..|.
Zfish   299 ------------------------------------------PNDPVTNICQAAD---------- 311

  Fly   463 SPDKCQELIQYQVQHNTLLFPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQH 527
                                                    :.||..|.|.|.:..|..|..:||.
Zfish   312 ----------------------------------------KQLFTLVEWAKRIPHFSELPLDDQV 336

  Fly   528 LLLQESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEM-----KTIQEILCRFRQI 587
            :||:..|.||.:.:.:..:|.:....:|.:.|   .|.::.|....:     :.:.|::.:.|.:
Zfish   337 ILLRAGWNELLIASFSHRSIAVKDGILLATGL---HVHRNSAHSAGVGAIFDRVLTELVSKMRDM 398

  Fly   588 TPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSL 652
            ..|.:|:||::||.||.|::.||.:...||.|:::....|..:.:.:||.|..||.:|||.||:|
Zfish   399 QMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPAL 463

  Fly   653 RTIRAATIEALFFKETIGNVPIARLLRDM 681
            |:|....:|.|||.:.||:.||...|.:|
Zfish   464 RSIGLKCLEHLFFFKLIGDTPIDTFLMEM 492

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
dsf	NP_477140.1	NR_DBD_TLX	5..98	CDD:143537	43/89 (48%)
		NR_LBD_Tlx_PNR_like	467..671	CDD:132748	54/208 (26%)
rxraa	XP_005161240.1	Nuc_recep-AF1	63..160	CDD:463363
		NR_DBD_RXR	166..247	CDD:143514	40/82 (49%)
		NR_LBD_RXR_like	267..478	CDD:132741	72/515 (14%)