DRSC/TRiP Functional Genomics Resources

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Protein Alignment dsf and Nr6a1

DIOPT Version :9

Sequence 1:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster
Sequence 2:XP_017447631.2 Gene:Nr6a1 / 362125 RGDID:1564740 Length:495 Species:Rattus norvegicus


Alignment Length:691 Identity:147/691 - (21%)
Similarity:198/691 - (28%) Gaps:300/691 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQCR 70
            ||.....|.:||||::|.||||.||:||.|||||||...|:|.|....:    |.:.:..||:|:
  Rat    68 DRAEQRTCLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKN----CVMSRKQRNRCQ 128

  Fly    71 ACRLAKCFQSAMNKDAVQHE--RGPRKPKLHPQLHHHHHHAAAAAAAAHHAAAAHHHHHHHHHAH 133
            .|||.||.|..||:.|::.:  .|.|...:.|                                 
  Rat   129 YCRLLKCLQMGMNRKAIREDGMPGGRNKSIGP--------------------------------- 160

  Fly   134 AAAAHHAAVAAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPPAPAAPPSGFHLTASGAQQ 198
                                           |..|....:.|                 .||  |
  Rat   161 -------------------------------VQISEEEIERI-----------------MSG--Q 175

  Fly   199 GPAPPAGH-LHHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSSAISGSGPGSTLPFPSHL 262
            .....|.| .:||.:.|                       |:||...|..:...|||||      
  Rat   176 EFEEEANHWSNHGDSDH-----------------------SSPGNRVSESNQPSPGSTL------ 211

  Fly   263 LHHNLIAEAASKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNYSSPSPSNSIQSISSIGS 327
                                     ||:.:...:...|.     ...|...|.....|.|..:.|
  Rat   212 -------------------------SSSRSVELNGFMTF-----RDQYMGMSVPPHYQYIPHLFS 246

  Fly   328 RSGGGEEGLSLGSESPRVNVETETPSPSNSPPLSAGSISPAPTLTTSSGSPQHRQMSRHSLSEAT 392
            .||          .||.:            || .|.|:.|      .|.|..|:.||...|....
  Rat   247 YSG----------HSPLL------------PP-QARSLDP------QSYSLIHQLMSAEDLEPLG 282

  Fly   393 TPPSHASLMICASNNNNNNNNNNNNGEHKQSSYTSGSPTPTTPTPPPPRSGVGSTCNTASSSSGF 457
            ||                                                               
  Rat   283 TP--------------------------------------------------------------- 284

  Fly   458 LELLLSPDKCQELIQYQVQHNTLLFPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLS 522
               :|..|      .|.|....|             :.:|......|||..:.|:|.|..|..||
  Rat   285 ---MLIED------GYAVTQAEL-------------FALLCRLADELLFRQIAWIKKLPFFCELS 327

  Fly   523 KNDQHLLLQESWKELFLLN------------LAQWTIPLDLTPILESPLIRE-RVLQDEATQTEM 574
            ..|...||..:|:||.||:            ||..|...       ||...| ....||.    |
  Rat   328 IKDYTCLLSSTWQELILLSSLTVYSKQIFGELADVTAKY-------SPSDEELHRFSDEG----M 381

  Fly   575 KTIQEILC---RFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYP 636
            :.|:.::.   :|.|:.....|..|||||.....:..||.....:|.|..:...|..|....:|.
  Rat   382 EVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLSSASQLEQLNKRYWYICQDFTEYKYT 446

  Fly   637 RQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARL 677
            .|..||..|::.||.:|.|....:          |||:.:|
  Rat   447 HQPNRFPDLMMCLPEIRYIAGKMV----------NVPLEQL 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 41/93 (44%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748 54/219 (25%)
Nr6a1XP_017447631.2 NR_DBD_GCNF_like 67..156 CDD:143543 41/91 (45%)
NR_LBD_DHR4_like 271..482 CDD:132751 65/313 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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