DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dsf and Hr39

DIOPT Version :9

Sequence 1:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_476932.1 Gene:Hr39 / 35398 FlyBaseID:FBgn0261239 Length:808 Species:Drosophila melanogaster


Alignment Length:684 Identity:151/684 - (22%)
Similarity:213/684 - (31%) Gaps:303/684 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GTAGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHR 66
            |.:..:|::.||.:|||:.||.||||:||:.|.|||||::...:.|.|...|.    |.|..:.|
  Fly   365 GISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGP----CQVSISTR 425

  Fly    67 NQCRACRLAKCFQSAMNKDAVQHE--RGPR--------------KPKLHPQLHHHHHHAAAAAAA 115
            .:|.|||..||.|..|..:|::.:  ||.|              .|.|.|.      .|||||||
  Fly   426 KKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSMLSPLLSPD------QAAAAAAA 484

  Fly   116 AHHAAAAHHHHHHHHHAHAAAAHHAAVAAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPP 180
                                    ||||                                     
  Fly   485 ------------------------AAVA------------------------------------- 488

  Fly   181 APAAPPSGFHLTASGAQQGPAPPAGHLHHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSS 245
                           :||.|             ||..    |..:|      .|||         
  Fly   489 ---------------SQQQP-------------HQRL----HQLNG------FGGV--------- 506

  Fly   246 AISGSGPGSTLPFPSHLLHHNLIAEAASKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNY 310
                       |.|                            .|||.|       :|||....:.
  Fly   507 -----------PIP----------------------------CSTSLP-------ASPSLAGTSV 525

  Fly   311 SSPSPSNSIQSISSIGSRSGGGEEGLSLGSESPR----VNVE-----TETPSPSNSPPLSA---G 363
            .|...:.:             |::.|..||..|.    ::||     |:......:.||||   |
  Fly   526 KSEEMAET-------------GKQSLRTGSVPPLLQEIMDVEHLWQYTDAELARINQPLSAFASG 577

  Fly   364 SISPAPTLTTSSGSPQHRQMSRHSLSEATTPPSHASLMICASNNNNNNNNNNNNGEHKQSSYTSG 428
            |.|.:.:..||||:  |.|:        |.|     |:..|..::|..|.|.:...|        
  Fly   578 SSSSSSSSGTSSGA--HAQL--------TNP-----LLASAGLSSNGENANPDLIAH-------- 619

  Fly   429 SPTPTTPTPPPPRSGVGSTCNTASSSSGFLELLLSPDKCQELIQYQVQHNTLLFPQQLLDSRLLS 493
                              .||.|                                    |.|   
  Fly   620 ------------------LCNVA------------------------------------DHR--- 627

  Fly   494 WEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTP----I 554
                       |:..|:|.|.|..|:.:|.:||..||..||.||.|.:....:|.   ||    :
  Fly   628 -----------LYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSID---TPGEIKM 678

  Fly   555 LESPLIRERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEML 619
            .:...|.....:....||.::.:..:....|::..|..|...||.|.|...:|..|.:...|...
  Fly   679 SQGRKITLSQAKSNGLQTCIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTTELQEAVKVREC 743

  Fly   620 QDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLR 653
            |::|...|..:....||...::||.|||.:|.|:
  Fly   744 QEKALQSLQAYTLAHYPDTPSKFGELLLRIPDLQ 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 39/108 (36%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748 46/191 (24%)
Hr39NP_476932.1 NR_DBD_Lrh-1_like 376..468 CDD:143541 36/95 (38%)
NR_LBD_F2 617..779 CDD:132728 50/240 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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