DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dsf and nr2f2

DIOPT Version :9

Sequence 1:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_571258.1 Gene:nr2f2 / 30424 ZFINID:ZDB-GENE-990415-252 Length:422 Species:Danio rerio


Alignment Length:677 Identity:152/677 - (22%)
Similarity:208/677 - (30%) Gaps:360/677 - (53%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLA 75
            |.|.||||:|||||||.::|:||..|||||:.||..|||:|..:    ||:|:.|||||:.|||.
Zfish    85 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQYCRLK 145

  Fly    76 KCFQSAMNKDAVQHERGPRKPKLHPQLHHHHHHAAAAAAAAHHAAAAHHHHHHHHHAHAAAAHHA 140
            ||.:..|.::|||..|.|                                               
Zfish   146 KCLKVGMRREAVQRGRMP----------------------------------------------- 163

  Fly   141 AVAAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPPAPAAPPSGFHLTASGAQQGPAPPAG 205
                                                                       |..|  
Zfish   164 -----------------------------------------------------------PTQP-- 167

  Fly   206 HLHHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSSAISGSGPGSTLPFPSHLLHHNLIAE 270
              |||    |.|.....|.|.|                 |.:||                     
Zfish   168 --HHG----QFALTNGDPLHCH-----------------SYLSG--------------------- 188

  Fly   271 AASKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNYSSPSPSNSIQSISSIGSRSGGGEEG 335
                                                                             
Zfish   189 ----------------------------------------------------------------- 188

  Fly   336 LSLGSESPRVNVETETPSPSNSPPLSAGSISPAPTLTTSSGSPQHRQMSRHSLSEATTPPSHASL 400
                                                                         :.||
Zfish   189 -------------------------------------------------------------YISL 192

  Fly   401 MICASNNNNNNNNNNNNGEHKQSSYTSGSPTPTTPTPPPPRSGVGSTCNTASSSSGFLELLLSPD 465
            ::.|.                                |.|.|..||.|             :.| 
Zfish   193 LLRAE--------------------------------PYPTSRYGSQC-------------MQP- 211

  Fly   466 KCQELIQYQVQHNTLLFPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLL 530
                                   :.::..|.:.|..||:||.||.|.:.:..|..|...||..||
Zfish   212 -----------------------NNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALL 253

  Fly   531 QESWKELFLLNLAQWTIPLDLTPIL------ESPLIRERVLQDEATQTEMKTIQEILCRFRQITP 589
            :.:|.|||:||.||.::||.:.|:|      .||:..:||:   |....::..||.:.:.:.:..
Zfish   254 RLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVV---AFMDHIRIFQEQVEKLKALHV 315

  Fly   590 DGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRT 654
            |.:|..|:|||.||..:..||.||..||.||:::||.|.::||.:||.|.||||:|||.||||||
Zfish   316 DSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRT 380

  Fly   655 IRAATIEALFFKETIGNVPIARLLRDM 681
            :.::.||.|||...:|..||..|:|||
Zfish   381 VSSSVIEQLFFVRLVGKTPIETLIRDM 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 46/86 (53%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748 76/209 (36%)
nr2f2NP_571258.1 NR_DBD_COUP_TF 87..159 CDD:143516 42/75 (56%)
NR_LBD_COUP-TF 185..420 CDD:132746 95/442 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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