Protein Alignment dsf and Rxra

DIOPT Version :9

• Sequence 1: NP_001260109.1
• Gene: dsf / 33823
• FlyBaseID: FBgn0015381
• Length: 691
• Species: Drosophila melanogaster
• Sequence 2: XP_038960270.1
• Gene: Rxra / 25271
• RGDID: 3610
• Length: 507
• Species: Rattus norvegicus
• Alignment Length: 676
• Identity: 122/676 - (18%)
• Similarity: 186/676 - (27%)
• Gaps: 363/676 - (53%)

  Fly    13 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKC 77
            |.:|||||||||||:|||:||.|||||::.::..|||:...|    |.:||..||:|:.||..||
  Rat   180 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYCRYQKC 240

  Fly    78 FQSAMNKDAVQHERGPRKPKLHPQLHHHHHHAAAAAAAAHHAAAAHHHHHHHHHAHAAAAHHAAV 142
            ....|.::|||.||
  Rat   241 LAMGMKREAVQEER--------------------------------------------------- 254

  Fly   143 AAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPPAPAAPPSGFHLTASGAQQGPAPPAGHL 207
                                                                  |:|
  Rat   255 ------------------------------------------------------QRG-------- 257

  Fly   208 HHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSSAISGSGPGSTLPFPSHLLHHNLIAEAA 272
                                                                             
  Rat   258 ----------------------------------------------------------------- 257

  Fly   273 SKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNYSSPSPSNSIQSISSIGSRSGGGEEGLS 337
                                           ...|.|
  Rat   258 -------------------------------KDRNEN---------------------------- 263

  Fly   338 LGSESPRVNVETETPSPSNSPPLSAGSISPAPTLTTSSGSPQHRQMSRHSLSEATTPPSHASLMI 402
                      |.|:.|.:|                        ..|....:.|       |.|.:
  Rat   264 ----------EVESTSSAN------------------------EDMPVEKILE-------AELAV 287

  Fly   403 CASNNNNNNNNNNNNGEHKQSSYTSGSP--TPTTPTPPPPRSGVGSTCNTASSSSGFLELLLSPD 465
                            |.|..:|...:.  .|::|..|     |.:.|..|.
  Rat   288 ----------------EPKTETYVEANMGLNPSSPNDP-----VTNICQAAD------------- 318

  Fly   466 KCQELIQYQVQHNTLLFPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLL 530
                                                 :.||..|.|.|.:..|..|..:||.:||
  Rat   319 -------------------------------------KQLFTLVEWAKRIPHFSELPLDDQVILL 346

  Fly   531 QESWKELFLLNLAQWTIPLDLTPILESPLIRERVLQDEATQTEM-----KTIQEILCRFRQITPD 590
            :..|.||.:.:.:..:|.:....:|.:.|   .|.::.|....:     :.:.|::.:.|.:..|
  Rat   347 RAGWNELLIASFSHRSIAVKDGILLATGL---HVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMD 408

  Fly   591 GSEVGCMKAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTI 655
            .:|:||::||.||.|::.||.:...||.|:::....|..:.:.:||.|..||.:|||.||:||:|
  Rat   409 KTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 473

  Fly   656 RAATIEALFFKETIGNVPIARLLRDM 681
            ....:|.|||.:.||:.||...|.:|
  Rat   474 GLKCLEHLFFFKLIGDTPIDTFLMEM 499

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
dsf	NP_001260109.1	NR_DBD_TLX	5..98	CDD:143537	42/84 (50%)
		NR_LBD_Tlx_PNR_like	467..671	CDD:132748	54/208 (26%)
Rxra	XP_038960270.1	Nuc_recep-AF1	58..171	CDD:403126
		NR_DBD_RXR	178..254	CDD:143514	40/77 (52%)
		NR_LBD_RXR_like	274..485	CDD:132741	66/291 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910