DRSC/TRiP Functional Genomics Resources

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Protein Alignment dsf and nhr-258

DIOPT Version :9

Sequence 1:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_501348.4 Gene:nhr-258 / 182927 WormBaseID:WBGene00016126 Length:398 Species:Caenorhabditis elegans


Alignment Length:102 Identity:36/102 - (35%)
Similarity:48/102 - (47%) Gaps:22/102 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGR-CPVDKTHRNQCRACRLAK 76
            |:||.|.:...|||...|..|.|||:|....::.:.|     .:|. |.:.|..||.|||||..|
 Worm    14 CRVCDDSNGQPHYGTICCPSCKGFFRRVYMSDKKFEC-----YRGNMCVIQKGTRNICRACRYKK 73

  Fly    77 CFQSAMN-KD---------AVQHERG------PRKPK 97
            |.|..|| ||         :|::||.      |:..|
 Worm    74 CLQVGMNVKDIRGKYTSPQSVEYERSSSAESTPKSSK 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 36/102 (35%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748
nhr-258NP_501348.4 ZnF_C4 13..80 CDD:197701 27/70 (39%)
HOLI 192..356 CDD:214658
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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