DRSC/TRiP Functional Genomics Resources

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Protein Alignment dsf and nhr-34

DIOPT Version :9

Sequence 1:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001023245.1 Gene:nhr-34 / 177800 WormBaseID:WBGene00003627 Length:631 Species:Caenorhabditis elegans


Alignment Length:710 Identity:132/710 - (18%)
Similarity:210/710 - (29%) Gaps:311/710 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGTAGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
            ||........:.|:||||..:|:|||..:|:||.|||:|||...|.|.|:    ..|:|.|.:.:
 Worm   139 MGNVQSEFTGLKCRVCGDSRAGRHYGTIACNGCKGFFRRSIWEQRDYVCR----FGGKCLVVQEY 199

  Fly    66 RNQCRACRLAKCFQSAMNKDAVQHERGPRKPKLHPQLHHHHHHAAAAAAAAHHAAAAHHHHHHHH 130
            ||:||||||.|||...|:..|||.||...|                                   
 Worm   200 RNRCRACRLRKCFTVGMDARAVQSERDKHK----------------------------------- 229

  Fly   131 HAHAAAAHHAAVAAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPPAPAAPPSGFHLTASG 195
                                                                             
 Worm   230 ----------------------------------------------------------------- 229

  Fly   196 AQQGPAPPAGHLHHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSSAISGSGPGSTLP-FP 259
                                                      .||..:::      .|||.| :|
 Worm   230 ------------------------------------------KNPKDSNN------EGSTSPQYP 246

  Fly   260 SHLLHHNLIAEAASKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNYSSPSPSNSIQSISS 324
                               ||:      :..|.|..|.:||.:.|.|::|:         |:|..
 Worm   247 -------------------TAS------TPISIPSTSTSQTPTSSVNSYNF---------QNIPG 277

  Fly   325 IGSRSGGGEEGLSLGSESPRVNVETETPSPSNSPPLSAGSISPAPTLTTSSGSPQHRQMSRH--S 387
            |.|||  ..|.|.:               ..||.|:..         |:.|.:..|..:.|:  .
 Worm   278 IVSRS--FSENLIM---------------RDNSVPVME---------TSQSAALSHVPLVRYLID 316

  Fly   388 LSEATTPPSHASLMICASNNNNNNNNNNNNGEHKQSSYTSGSPTPTTPTPPPPRSGVGSTCNTAS 452
            |.:||             :|..:.|.:..:.|..|                  ...|..|...|.
 Worm   317 LEKAT-------------DNLIDENCDFMSMEFDQ------------------LCRVDVTIEAAF 350

  Fly   453 SSSGFLELLLSPDKCQELIQYQVQHNTLLFPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMP 517
            ...|.                 |...|.  |:.|...||.:.|.:.....|...:.:.:.|.:..
 Worm   351 RQPGV-----------------VAKRTP--PRWLALERLTTLEDVHIAWCRSFVLCIDYAKIMKD 396

  Fly   518 FQTLSKNDQHLLLQE-----SW------------KELFLLNLAQWTIPLDLTPILES------PL 559
            :|.||..||..||:.     :|            ..:.|:|.:.:....:|...|:.      .:
 Worm   397 YQELSPTDQFTLLRNRVISVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKQLDPGCNHYFRI 461

  Fly   560 IRERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAP----ETAGLCDVQPV--EM 618
            :.|.:::|            ::...|::..|..|...:||:.||..    ...|...::.|  :.
 Worm   462 LSEHLMED------------LVIPMREMDMDEGEFVILKALILFRAHRRLSEEGRAHIKRVRDKY 514

  Fly   619 LQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIE-----ALFFKETIGNVP 673
            ::...|.:...|......:.:.|..::||||||:..:.....:     |||....:..:|
 Worm   515 IEALYQHVQHQHRHFSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLP 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 42/92 (46%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748 44/237 (19%)
nhr-34NP_001023245.1 NR_DBD_HNF4A 151..226 CDD:143518 40/78 (51%)
HOLI 380..551 CDD:214658 34/182 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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