DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11147 and Abca14

DIOPT Version :10

Sequence 1:NP_608954.1 Gene:CG11147 / 33803 FlyBaseID:FBgn0031734 Length:711 Species:Drosophila melanogaster
Sequence 2:XP_038957098.1 Gene:Abca14 / 365362 RGDID:1561491 Length:1691 Species:Rattus norvegicus


Alignment Length:276 Identity:82/276 - (29%)
Similarity:146/276 - (52%) Gaps:17/276 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AAVEVRNGYKYYGSKSNPKIVLNQLNMNVMRGSIYGLLGASGCGKTTLLSCIVGQRRLNGGEVVV 66
            :.|.::...|.| .|..|.:.:..:::.:.:...:||||.:|.||||....:.|:.....|:|.:
  Rat  1363 STVLIKKLIKIY-FKIPPTLAVRNISLTIQKEECFGLLGLNGAGKTTTFKILTGEEIATSGDVFI 1426

  Fly    67 LGAKPGEPGSGVPGSRVGFMPQEIALVEEMTVKETIFYFGRIYGLTDERIREKF-KLLKELLQLP 130
            .|.........| .|::|:.||..||::.||.:|.:..:.|::|:.:..||... .|||.|...|
  Rat  1427 EGYSITRNILKV-RSKIGYCPQFDALLDYMTSREILTMYARVWGIPENNIRSYVNNLLKMLYLKP 1490

  Fly   131 PARQMIKQCSGGQQRRLSFACAMIHDPELLILDEPTVGLDPMLREKIWDFLVETTRNSKLAVIIT 195
            .|.:.|...|||.:||||.|.|::.:..::.||||:.|:||:.|..:|:.::.|..:.|: :|||
  Rat  1491 QAEKFIYTLSGGNKRRLSTAIAIMGNSSVVFLDEPSTGMDPLARRMLWNAVIRTRESGKV-IIIT 1554

  Fly   196 THYIEEAKQANC--IGLMRNGVLLAEDTPTNIMIKFG---TQSIEDAFLILSQRQGNEDELAQIM 255
            :|.:||. :|.|  :.:|..|.|:...:|.::..|||   |.:|:       .:.|.:|::.|.:
  Rat  1555 SHSMEEC-EALCTRLAIMVQGKLVCLGSPQHLKNKFGNIYTMNIK-------FKTGTDDDVVQDL 1611

  Fly   256 DHNKNQALPAAVLPPE 271
            .:...:..|.:.|..|
  Rat  1612 KNYIAEVFPGSDLKQE 1627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11147NP_608954.1 CcmA 4..245 CDD:440746 76/246 (31%)
ABC2_membrane_3 322..702 CDD:463674
YadH 513..710 CDD:440604
Abca14XP_038957098.1 rim_protein <100..1681 CDD:130324 82/276 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.