DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment APOB and apoba

DIOPT Version :10

Sequence 1:NP_000375.3 Gene:APOB / 338 HGNCID:603 Length:4563 Species:Homo sapiens
Sequence 2:XP_694827.8 Gene:apoba / 566465 ZFINID:ZDB-GENE-070702-4 Length:4416 Species:Danio rerio


Alignment Length:4537 Identity:1544/4537 - (34%)
Similarity:2527/4537 - (55%) Gaps:252/4537 - (5%)


- Green bases have known domain annotations that are detailed below.


Human     8 LLALLALPALLLLLLAGARAEEEMLENVSLVCPKDATRFKHLRKYTYNYEAESSSGVPGTADSRS 72
            |..||.|.|   .||||: .|||..|.:| .||..| |||:||||.|.|.|||.:||.|||:.::
Zfish     5 LCLLLFLSA---HLLAGS-TEEEDTEGLS-KCPLSA-RFKNLRKYVYQYTAESKNGVTGTANLKN 63

Human    73 ATRINCKVELEVPQLCSFILKTSQCTLKEVYGFNPEGKALLKKTKNSEEFAAAMSRYELKLAIPE 137
            ..:|:|:||:||||.|||:|:|::|.|.||...:.:|:.:.::...:|.|.|||.:..|...:.:
Zfish    64 GPKISCQVEIEVPQTCSFVLRTTECVLSEVSVIDAQGQPVYRQAAGAEAFQAAMEKNTLNFVVDQ 128

Human   138 GKQVFLYPEKDEPTYILNIKRGIISALLVPPETEEAKQVLFLDTVYGNCSTHFTVKTRKGNVATE 202
            ...|.:|||:|||..|||||||||||||||...||..:  .:.|::|.|.|..||.:|| ::..:
Zfish   129 VTSVSIYPEEDEPENILNIKRGIISALLVPVLEEEHNE--RMSTIHGICKTEVTVNSRK-DIDID 190

Human   203 ISTERDLGQCDRFKPIRTGISPLALIKGMTRPLSTLISSSQSCQYTLDAKRKHVAEAICKEQHLF 267
            :|..|||..|..|.|.....|||:|:.|:....|.||.|:|:|.|..|.:|||:.||.|.|:|||
Zfish   191 VSVVRDLSDCSHFSPHSLSTSPLSLMPGLNGLFSKLIRSTQTCNYQFDNRRKHMTEAQCTEKHLF 255

Human   268 LPFSYKNKYGMVAQVTQTLKLEDTPKINSRFFG-EGTKKMGLAFESTKSTSPPKQAEAVLKTLQE 331
            :|||::.:||:.::|.|:|.|:|:.|||:|:|. :.:.:..|..|..:...|.:..:.||.|::|
Zfish   256 IPFSHEGQYGISSEVKQSLTLQDSVKINNRYFNKDDSLEKKLFIEEVEDKHPVQSKDDVLATMKE 320

Human   332 LKKLTISEQNIQRANLFNKLVTELRGLSDEAVTSLLPQLIEVSSPITLQALVQCGQPQCSTHILQ 396
            |..|:.|.::.|||:||:|||:|:|||.:|.::....::::.|..:|.|.|.|||..:|::.|:|
Zfish   321 LITLSSSGKSQQRASLFHKLVSEVRGLKNETLSGAADEMMKFSEWLTWQTLFQCGTDECTSAIMQ 385

Human   397 WLKRVHANPLLIDVVTYLVALIPEPSAQQLREIFNMARDQRSRATLYALSHAVNNYHKTNPTGTQ 461
            .|:........:|.:.|.::|:|:.|.|:||::.:||:.:.|:..:|||::.|....:...|.|.
Zfish   386 ILRTFDEADREVDAIVYALSLLPQSSPQRLRDMLSMAQSKPSKPIMYALANTVKQLPQDQATSTP 450

Human   462 ELLDIANYLMEQIQDDCTGDEDYTYLILRVIGNMGQTMEQLTPELKSSILKCVQSTKPSLMIQKA 526
            |:.::|.: ||.:..||:||||.|:|.|||||.||:.|:.. |.||||:|.|::.....|.:|||
Zfish   451 EVKEVAKF-MEFMLGDCSGDEDSTFLTLRVIGVMGKYMDGF-PSLKSSVLNCMKQAYAPLPVQKA 513

Human   527 AIQALRKMEPKDKDQEVLLQTFLDDASPGDKRLAAYLMLMRSPSQADINKIVQILPWEQNEQVKN 591
            ||||.|.||.....:..|:|.:.:..:|..||:||||||||:|..|:  .:::.|..|||||||:
Zfish   514 AIQAFRLMEMDSDVRSALIQQYQNVEAPAQKRIAAYLMLMRNPEVAE--NVLRTLKSEQNEQVKS 576

Human   592 FVASHIANILNSEELDIQDLKKLVKEALKESQLPTVMDFRKFSRNYQLYKSVSLPSLDPASAKIE 656
            ||:|||||||.||..::...|..:.:|::.......|||.|.||||:        :..|....:|
Zfish   577 FVSSHIANILESENPNLSIAKDYILKAVQGDVSFPPMDFTKLSRNYK--------TEVPLVGSVE 633

Human   657 GNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYW 721
            .|:|||..||:|:|.||.|||..|   :.:::||||||:|.||.:|.|||:.|||||:::||:||
Zfish   634 SNVIFDSANYMPREVMLATTLDNF---NPEILEIGLEGEGLEPVIEVLFGENGFFPDTISKAMYW 695

Human   722 VNGQVPDGVSKVLVDHFGYTKDDKHEQDMVNGIMLSVEKLIKDLKSK-----EVPEARAYLRILG 781
            ||.::|..|.:||.........::.::.:...||.|:|:.|.:.|::     :.|:..||||:||
Zfish   696 VNDKIPHPVKRVLEKWISPLNGERMKRQVPQDIMKSMEEYISEFKNRLEQVEDAPKGLAYLRLLG 760

Human   782 EELGFASLHDLQLLGKLLLMGARTLQGIP-QMIGEVIRKGSKNDFFLHYIFMENAFELPTGAGLQ 845
            .|||:....||:.:.:.:.:.|.|.:... ..:|::| ...:|:||:||:|::.||.|||.||..
Zfish   761 TELGYLKTSDLKHVTQYINLCAETFKSTSLNFMGKLI-SSLENEFFVHYMFLDKAFTLPTSAGFP 824

Human   846 LQISSSGVIAPGAKAGVKLEVANMQAELVAKPSVSVEFVTNMGIIIPDFARSGVQMNTNFFHESG 910
            |:::.|||:|||||.|  |.:..|..:|...|||.|||:|.||:.||:|..:|::.:||.:|||.
Zfish   825 LKLTLSGVLAPGAKGG--LTIDRMMQQLSFMPSVGVEFITQMGVYIPEFVVAGIETHTNLYHESA 887

Human   911 LEAHVALKAGKLKFIIPSPKRPVKLLSGGNTLHLVSTTKTEVIPPLIENRQSWSVCKQVFPGLNY 975
            :.|.|.|...::|..||:|...::|.|..|.:..|::|:|:::|.::|:|...:.|.::|||:||
Zfish   888 VNARVTLSDSQIKLSIPAPSGNIQLFSVSNKILSVTSTQTKIVPSMVEDRIDSTECNRIFPGMNY 952

Human   976 CTSGAYSNASSTDSASYYPLTGDTRLELELRPTGEIEQYSVSATYELQR---EDRALVDTLKFVT 1037
            ||...|||||||::|.||||||:|||.|||:||||:.:|:.:.:|.|.|   |.|..||::|.|.
Zfish   953 CTILRYSNASSTNNAPYYPLTGETRLALELQPTGEVPEYTATISYALLREGKEGRQKVDSVKIVL 1017

Human  1038 QAEGAKQTEATMTFKYNRQSMTLSSEVQIPDFDVDLGTILRVNDESTEGKTSYRLTLDIQNKKIT 1102
            :||||:.||||...||||....|::::||||:|::.|..|.|.|.:.:||....:|:|:.|:.|.
Zfish  1018 KAEGAEPTEATAVVKYNRNRSILTTDLQIPDYDLEAGIKLAVTDTNAKGKKMRGITIDVTNRDIP 1082

Human  1103 EVALMGHLSCDTKEERKIKGVISIPRLQAEARSEILAHWSPAKLLLQMDSSATAYGSTVSKRVAW 1167
            :::::||...::..:..|:..:|:|.||.:..:......:.. |:||::::.....:|..::...
Zfish  1083 QLSIVGHARLESMRDGLIELQMSVPALQMDTSATATLKKNNG-LVLQLETAFNMPETTSVQKAIL 1146

Human  1168 HYDEEKIEFEWNTGTNVDTKKMTSNFPVDLSDYPKSLHMYANRLLDHRVPQTDMTFRHVGSKLIV 1232
            .||..|:|.|..:..|.:.:|:   || ::.:|...|....:.:||.:|.:|||..||:.||.:.
Zfish  1147 RYDNNKVEIEMKSDINSEVEKL---FP-NMEEYRSQLQASIDEILDKKVTKTDMKLRHIVSKGLE 1207

Human  1233 AMSSWLQKASGSLPYTQTLQDHLNSLKEFNLQNMGLPDFHIPENLFLKSDGRVKYTLNKNSLKIE 1297
            |::.||.|.:....:.. :|.:..|..|..|.:       :||.|:||||..::|..||..:.|.
Zfish  1208 AVNIWLDKIAAGSSFVD-VQRNKRSTPELILPS-------LPEKLYLKSDALLRYQFNKGRISIS 1264

Human  1298 IPLPFGGKSSRDLKMLETVRTPALHFKSVGFHLPSREFQVPTFTIPKLYQLQVPLLGVLDLSTNV 1362
            :||..|||||.:|.:..|:..|.:....:|..:|...:::|:||||:..:..:|:|||.:||..:
Zfish  1265 LPLLLGGKSSAELDIPPTLTLPQIQIPLLGLEVPENSYKIPSFTIPRTLEFSLPMLGVAELSAKM 1329

Human  1363 YSNLYNWSASYSGGNTSTDHFSLRARYHMKADSVVDLLSYNVQGSGETTYDHKNTFTLSCDGSLR 1427
            .||.|.|..|..|||.:.|..:..|:|.:.|...:..|||.::|.|..:....:|.....:||:.
Zfish  1330 NSNFYEWEGSILGGNNTVDVPNYIAKYKIMASCPLTPLSYKIEGMGMISGTVDDTLKYLVNGSIN 1394

Human  1428 HKFLDSNIKFSHVEKLGNNPVSKGLLIFDASSSWGPQMSASVHLDSKKKQHLFVKEVKIDGQFRV 1492
            |..||::|.|.....|.:....:.....:|||..|...|......|.......:.:..:||..::
Zfish  1395 HCLLDASISFFETMSLADKINGRTNYRLEASSPLGLDTSLFYSAQSASTSDEVIGDGNLDGFIKI 1459

Human  1493 SSFYAKGTYGLSCQRDPNTGRLNGESNLRFNSSYLQGTNQITGRYEDGTLSLTSTSDLQSGIIKN 1557
            .|.||..|...|...:.......|||.|:|:||.:||.|.|.|.|.:|.|||.|.::.|:.::|:
Zfish  1460 GSLYANSTLSQSYIYNMPKQEGKGESTLKFDSSLIQGQNVIKGSYVNGELSLLSKTNAQNDVLKH 1524

Human  1558 TASLKYENYELTLKSDTNGKYKNFATSNKMDMTFSKQNALLRSEYQADYESLRFFSLLSGSLNSH 1622
            ...||::..||::|||.:......|...|.::......|.|:.|.|::..:...||||:|||||:
Zfish  1525 VVELKHKKGELSVKSDGSATALGKALRCKAELDVKNGEATLKVESQSNDATHDAFSLLTGSLNSN 1589

Human  1623 GLELNADILGTDKINSGAHKATLRIGQDGISTSATTNLKCSLLVLENELNAELGLSGASMKLTTN 1687
            |||:|.:.|...:...|.||.||..|.:|:|||..|.::.:.|..||..|..:...|||:.:.:.
Zfish  1590 GLEINMEGLLNLESGRGTHKGTLSFGGNGLSTSCMTTIEGNSLTFENAFNGGINGEGASVSVVSK 1654

Human  1688 GRFREHNAKFSLDGKAALTELSLGSAYQAMILGVDSKNIFNFKVSQEGLKLSNDMMGSYAEMKFD 1752
            |..:::..:.:..||.:..|.||.|.:|.......::|..|..::::||.:||.|.|:..:|:.:
Zfish  1655 GSSQDNTIELNAKGKISPKEASLTSVFQGNAFDGTARNTMNIGINKQGLSMSNTMRGTLQKMRSE 1719

Human  1753 HTNSLNIAGLSLDFSSKLDNIYSSDKFYKQTVNLQLQPYSLVTTLNSDLKYNALDLTNNGKLRLE 1817
            ...:|||...:|.|.||.||.......|...:.:.::|:....:.|::|:.....|:::|:|::|
Zfish  1720 CMQTLNITLWTLAFRSKNDNFICDGASYNHDIKVNMRPFITSISANNELELFDFGLSSDGRLKME 1784

Human  1818 PLKLHVAGNLKGAY-QNNEIKHIYAISSAALSASYKADTVAKVQGVEFSHRLNTDIAGLASAIDM 1881
            |.|:.|||:|.|.| :::...|....:.|.|:.:.|.||..||.....|:|.:.|.|||:|.::.
Zfish  1785 PFKMDVAGSLGGKYGEDDSFNHGCEFTYADLAGTIKCDTAVKVFDSHISNRFDLDFAGLSSVMNT 1849

Human  1882 STNYNSDSLHFSNVFRSVMAPFTMTIDAHTNGNGKLALWGEHTGQLYSKFLLKAEPLAFTFSHDY 1946
            .|..|.:||...|..|::..||::|:||..|.:|.:..:|:|:||:.|||||||||||...||:.
Zfish  1850 KTQVNCESLRLENNIRTMAMPFSLTVDAIFNSDGTVNFYGKHSGQVSSKFLLKAEPLAIAKSHEC 1914

Human  1947 KGSTSHHLVSRKSISAALEHKVSALLTPAEQTGTWKLKTQFNNNEYSQDLDAYNTKDKIGVELTG 2011
            :.|..|.|.:.:|....:|:|..:||.|.||:..||.|::.||:.|:||::.||.::.:||:.:|
Zfish  1915 RASAVHMLPNGESAETHIENKFDSLLIPNEQSVLWKFKSKLNNHAYNQDVNIYNKENDMGVQFSG 1979

Human  2012 RTLADLTLLDSPIKVPLLLSEPINIIDALEMRDAVEKP---QEFTIVAFVKYDKNQDVHSINLPF 2073
                       .::..|..:|          |::.:.|   |:|:...|||||||.|.|.|..||
Zfish  1980 -----------VLQTNLFNTE----------RESSDIPLDYQKFSTSGFVKYDKNSDCHIIYFPF 2023

Human  2074 FETLQEYFERNRQTIIVVLENVQRNLKHINIDQFVRKYRAALGKLPQQANDYLNSFNWERQVSHA 2138
            .|:....||..:..|:...|::|..|..::::..:.::|..|.:.||:.||.:...:.|.::::.
Zfish  2024 IESFPAAFESIKNAILHKFESLQNYLNSLDLNALIGQFRNKLDEFPQKVNDIIVDLDLENKINNV 2088

Human  2139 KEKLTALTKKYRITENDIQIALDDAKINFNEKLSQLQTYMIQFDQYIKDSYDLHDLKIAIANIID 2203
            |.:|.:|...|.|:.:|:....:..|....:|:....|.:......|||..:......::::|:.
Zfish  2089 KNQLISLIHDYTISIDDLDAYAERFKEATGKKIIDFATKIRDLSIQIKDGIESGAWANSVSDILA 2153

Human  2204 EIIEKLKSLDEHYHIRVNLVKTIHDLHLFIENIDFNKSGSSTASWIQNVDTKYQIRIQIQEKLQQ 2268
            :|..:||:.||.|.|...:::.|..:...|..||..|...|:.:|::.:|.||:|:.::.|||.:
Zfish  2154 QIGRELKAFDEKYKITKTIIRGIDGIEDVIRQIDLEKLKDSSVTWLKQLDAKYEIKTKLLEKLSE 2218

Human  2269 LKRHIQNIDIQHLAGKLKQHIEAIDVRVLLDQLGTTISFERINDILEHVKHFVINLIGDFEVAEK 2333
            |::.::..:|..|...|:|:|.:||:...:|||...|.:|.|..:|:..|..::|.|.::||.||
Zfish  2219 LRKVVETFEINMLLEDLRQYITSIDLTEYVDQLSGQIPYEDIERVLDSAKDVILNWIEEYEVPEK 2283

Human  2334 INAFRAKVHELIERYEVDQQIQVLMDKLVELAHQYKLKETIQKLSNVLQQVKIKDYFEKLVGFID 2398
            ||.......|||.|||:|::|:|::::.:.|..||:::|.:|.:.:.|:.::.:...:|::..:|
Zfish  2284 INRVYLNAQELILRYEIDKKIEVIVEQAIILVKQYRIQELVQAVVDTLKSIQFEYISDKMMEIMD 2348

Human  2399 DAVKKLNELSFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEI-QALELPQK 2462
            ..|..|..:.|:..:.|:|.::.::||..::|||:.::||.|.|:|:|...:|.:| :..|:|:|
Zfish  2349 SIVSLLKRMDFQKIVNDLNDYIQLIIKTFRTFDYNTYIDEVNRKVRDVVDYINKQINEVYEIPRK 2413

Human  2463 AEALKLFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLEDTRDRMYQMD 2527
            .||.:.|::|.:|||..|||.|::|:|..:...:::.:.:.:...:|.|.::.:||.|.|:..||
Zfish  2414 IEASREFIKEMQATVFDYLEKLKNTRIAEVCRNIKDVIDTTAYKDIKLKIQDIIEDVRQRISDMD 2478

Human  2528 IQQELQRYLSLVGQVYSTLVTYISDWWTLAAKNLTDFAEQYSIQDWAKRMKALVEQGFTVPEIKT 2592
            |:.|:..||......|..::.||          ||.|.:             |:::...:.|.|.
Zfish  2479 IRDEISVYLERASGAYVNMIEYI----------LTQFTQ-------------LIDEMKKMAEDKE 2520

Human  2593 ILGTM-PAFEVSLQALQKATFQTPDFIVPLTDLRIPSVQINFKDLKNIKIPSRFSTPEFTILNTF 2656
            ||..: .|.|....||:.|.|..|.|::|.|.|.||:.:|....:.:|.||:..:.||||:|:..
Zfish  2521 ILDQISQAVEGVFNALKTAEFDVPAFMLPFTTLEIPAFKIKMARIHDITIPAMITIPEFTVLDLI 2585

Human  2657 HIPSFTIDFVEMKVKIIRTIDQMLNSELQWPVPDIYLRDLK---VEDIPLARITLPDFRLPEIAI 2718
            .:||.|:||.::|..||..||::...|:....|:....||:   :.|:|  ..|..:..|.||..
Zfish  2586 SLPSITVDFEKIKQSIIDFIDKVRQIEMPEVDPEAIFGDLRALYLSDLP--DFTFSEITLSEIKF 2648

Human  2719 PEFIIPTLNLNDFQVPDLHIPEFQLPHISHTIEVPTFGKLYSILKIQSPLFTLDANADIGNGTTS 2783
            ||..:|.|.|:.|::..|.|||.:.|.|.....:|.|||||...|:.||.:||..:|...|.||:
Zfish  2649 PEINVPKLKLDSFEITMLPIPEVKFPEIPFEPCLPAFGKLYGEFKVDSPYYTLMTSAAFENTTTA 2713

Human  2784 ANEAGIAASITAKGESKLEVLNFDFQANAQLSNPKINPLALKESVKFSSKYLRTEHGSEMLFFGN 2848
            .......|::.:..:|.||.|::...|..|:..||:..:.:.|:|..|.....|||...::..|.
Zfish  2714 LKFPQFKATLKSNAKSSLEFLDYTLDAMLQIEAPKMRKMIISETVSLSHMAFGTEHEGSVVLSGP 2778

Human  2849 AIEGKSNTVASLHTEKNTLELSNGVIVKINNQLTLDSNTKYFHKLNIPKLDFSSQADLRNEIKTL 2913
            :.|..:.|...:.|...|.:|.|.:.:.:.|.::...:|.|.|.||||:||.||||.:....|..
Zfish  2779 SAEATAKTAVKVTTHMYTADLINNIGITLKNGISAYMDTSYNHNLNIPRLDISSQAIITRTAKAR 2843

Human  2914 LKAGHIAWTSSGKGSWKW----------ACPRFSDEGTHESQISFTIEGPLTSFGLSNKINSKHL 2968
            .::|.|:.|....||.||          :...:|||.||:|....|:...........:.||::|
Zfish  2844 FESGTISLTVGTVGSGKWSPSNPSRTVKSIDDYSDEITHKSDFEITVNAGTAKLNFDGETNSRNL 2908

Human  2969 RVNQNLVYESGSLNFSKLEIQSQVDSQHVGHSVLTAKGMALFGEGKAEFTGRHDAHLNGKVIGTL 3033
            ::.|::..||..|:...::.:::.::..:..||||.|..|...:.:.|....|.|.|.|||.|::
Zfish  2909 KMKQSVSAESVILSHITIDARAETEAPFLKGSVLTLKVKAQMEDVRMEIEISHSADLIGKVSGSI 2973

Human  3034 KNSLFFSAQPFEITASTNNEGNLKVRFPLRLTGKIDFLNNYALFLSPSAQQASWQVSARFNQYKY 3098
            .|:..|.|||||:|....|:||.|:..||:||||||..:::...|:.:.|.|.|...||||||||
Zfish  2974 SNTCDFLAQPFEVTLDCRNKGNSKIILPLKLTGKIDLQDDFGFTLNSNKQHAFWVGLARFNQYKY 3038

Human  3099 NQNFSAGNNENIMEAHVGINGEANLDFLNIPLTIPEMRLPYTIITTPPLKDFSLWEKTGLKEFLK 3163
            ..|.:..||||....:..::.||||:||.:|::|||:.:||..|.||.:.:||.||...||:.|.
Zfish  3039 KHNLTFDNNENEAGIYTSVDCEANLEFLTVPISIPEIPIPYLGIKTPQINEFSFWEDYRLKDLLT 3103

Human  3164 TTKQSFDLSVKAQYKKNKHRHSITNPLAVLCEFISQSIKSFDRHFEKNRNNALDFVTKSYNETKI 3228
            |.||:.|:..|..|:||..:|:....|..:.|..:::.|....|||..|::..|.:|.|||:.:|
Zfish  3104 TPKQTIDIDFKLLYQKNPEKHTFDLNLEPIYEAFNENAKILRLHFELGRDHIFDALTNSYNQARI 3168

Human  3229 KFDKYKAEKSHDELPRTFQIPGYTVPVVNVEVSPFTIEMSAFGYVFPKAVSMPSFS--ILGSDVR 3291
            :.:|||.:.|:.. ||.|.:||||:|::|:|||.|..|:.||||..||.||.|||.  :||  ..
Zfish  3169 QHEKYKIDTSNHP-PRYFTVPGYTIPILNIEVSAFRAELPAFGYFIPKEVSTPSFKTPLLG--FS 3230

Human  3292 VPSYTLILPSLELPVLHVPRNLK-LSLPDFKELCTISHIFIPAMGNITYDFSFKSSVITLNTNAE 3355
            ||||||:||||.|||||||..|: |:||.|......::|.|||.||:||:||.||.|::||:|..
Zfish  3231 VPSYTLVLPSLALPVLHVPETLRDLTLPTFTIPDIQNNIMIPAFGNMTYEFSIKSPVLSLNSNGG 3295

Human  3356 LFNQSDIVAHLLSSSSSVIDALQYKLEGTTRLTRKRGLKLATALSLSNKFVEGSHNSTVSLTTKN 3420
            |:|.||:|.....||:||.|.|:.||:|:..:.::||||:||:|||.:...|.||.||||||.:|
Zfish  3296 LYNHSDMVIKFDVSSTSVFDVLKGKLDGSATINKRRGLKMATSLSLVHMCAECSHESTVSLTKRN 3360

Human  3421 MEVSVATTTKAQIPILRMNFKQELNGNTKSKPTVSSSMEFKYDFNSSMLYSTAKGAVDHKLSLES 3485
            ||.|:....|.:.|:|.|:..|.|.|||||||.::|:::..|.::..::.:...|::||..:||:
Zfish  3361 MEASLTNLAKIKCPVLMMDLNQVLRGNTKSKPNIASNIKVSYSYDLPIIETQGTGSIDHNFALEA 3425

Human  3486 LTSYFSIESSTKGDVKGSVLSREYSGTIASEANT----YLNSKSTRSSVKLQGTSKI----DDIW 3542
            |:||.|:||:.||....:::.   ||.:|:..|.    |||:...||::|....||:    ...|
Zfish  3426 LSSYISLESAWKGTTDSTIME---SGNLAASLNNEVTIYLNANGLRSTLKTDVNSKVYHQKAGSW 3487

Human  3543 NLEVKENFAGEATLQRIYSLWEHSTKNHLQLEGLFFTNGEHTSKATLELSP-WQMSALVQVHASQ 3606
            |::|.:|.|.||:|:|||:...:::.|...:.. |.|||:...:||||..| ..:||.:.:..||
Zfish  3488 NIDVTKNLALEASLRRIYATMAYTSSNAASIAS-FSTNGKQNVRATLEFVPLTTLSANLDIDISQ 3551

Human  3607 PSSFHDFPDLGQEVALNANTKNQKIRWKNEVRIHSGSFQSQVELSNDQEKAHLDIAGSLEGHLRF 3671
            |::: ....:.:.:.|:..:..|:..|..:.::.:....:.:.|||.|.:..::::.|:||.:.|
Zfish  3552 PTNY-GHAGIVENIDLSITSDKQRFLWSGKEQLATLIHSADLILSNTQSEIRVEMSESVEGKVAF 3615

Human  3672 LKNIILPVYDKSLWDFLKLDVTTSIGRRQHLRVSTAFVYTKNPNGYSFSIPVKVLAD--KFIIPG 3734
            ||:|.||||.|||||..|....:|.|..|...|||..:|||:..|..|:||.|:..:  .|.||.
Zfish  3616 LKSIKLPVYQKSLWDIFKFGEVSSTGELQFFNVSTVVIYTKSMEGTLFAIPTKLFENGVSFNIPQ 3680

Human  3735 LKLN----------------------------DLNSVLVMPTFHVPFTDLQVPSCKLDFREIQIY 3771
            :...                            .:..|:.:|.|.:|||.|.||:..:|...:::.
Zfish  3681 ITFGVPELLKTIPQLIREVDMRFEEPDLPDYISIPPVITIPEFSIPFTTLHVPTFVIDLTNLEVP 3745

Human  3772 KKLRTSSFALNLPTLPEVKFPEVDVLTKYSQPEDSLIPFFEITVPESQLTVSQFTLPKSVSDGIA 3836
            .::.|.||.:.||.||:|:.|.::..|||.  :|.:...| :::|:.::|:|.|.|||:...|..
Zfish  3746 NEISTPSFDIMLPGLPKVEIPSINARTKYL--KDKMAHLF-VSLPQYEITISPFNLPKAFDIGDY 3807

Human  3837 ALDLNAVANKIADFELPTIIVPEQTIEIPSIKFSVPAGIVIPSFQALTARFEVDSPVYNATWSAS 3901
            .:.|:.:.|.:..|||||||:|||.|::|.|...:|||:.||.|.||:|.|::.||:||.||:.:
Zfish  3808 PIRLDDITNTLYHFELPTIIIPEQKIDVPEISLHLPAGVFIPKFGALSATFKMVSPIYNNTWTGN 3872

Human  3902 LKNKADYVETVLDSTCSSTVQFLEYELNVLGTHKIEDGTLASKTKGTFAHRDFSAEYEEDGKYEG 3966
            ::|........|.|||:||:.||||.|:.:.|..:|:|.|....|.||.|||.:..::.|.: :.
Zfish  3873 VENTEAGTVCTLKSTCTSTMVFLEYNLDAIVTILLENGALGLDAKSTFNHRDMNINWKHDLR-QN 3936

Human  3967 LQEWEGKAH----------LNIKSPAFTDLHLRYQKDKKGISTSAASPAVGTVGMDMDEDDD--- 4018
            |:....::.          ::|.|..|:|:..||.....||::|.:|||.|.:|........   
Zfish  3937 LRMKRDESSVSRPSRHTLGIDIASQTFSDVSFRYASHNNGITSSVSSPAAGFIGFQFTRRSPSQF 4001

Human  4019 ----FSKWNFYYSPQSSPDKKLTIFKTELRVRESDEETQIKVNWEEEAASGLLTSLKDNVPKATG 4079
                ||::      .|:|||...:...::.::.| |:..::|.:.....|.::..|||.:|....
Zfish  4002 YAKLFSRY------LSTPDKDTDLLSLKMTLKNS-EKLSVQVGYHFSGLSDMINGLKDRLPSILA 4059

Human  4080 VLYDYVNKYHWEHTGLTLREVSSKLRRNLQNNAEWVYQGAIRQIDDIDVRFQKAASGTTGTYQEW 4144
            .|..::|:||.:|.|:.:...:.||:..|.|..:..|....|..|           .|..::::.
Zfish  4060 ALQKFINQYHIDHLGMDINRAALKLKNALSNGIDKAYLEIPRMFD-----------ATHTSFEQV 4113

Human  4145 KDKAQNLYQELLTQEGQASFQGLKDNVFDGLVRVTQEFHMKVKHLIDSLIDFLNFPRFQFPGKPG 4209
            |.....:::::|....|...|......|.......:.:...::.|:|:.:.||...:|..||...
Zfish  4114 KQHGNKMWRKMLESFPQDDLQEFSRRFFSSANEFIRTYESNMRALLDAALKFLRNTKFHLPGLEE 4178

Human  4210 IYTREELCTMFIREVGTVLSQVYSKVHNGSEILFSYFQDLVITLPFELRKHKL-----IDVISMY 4269
            ..|.:||...|...|...:.:|.::       .:|..:.:|.|:...:.|.:.     .:||| .
Zfish  4179 KLTGQELYNKFREYVSKAIDRVTTR-------FYSLMEAIVDTISGHINKVEFTLPGTTEVIS-G 4235

Human  4270 RELLKDL---SKEAQE-VFKAI---QSLKTTEVLRNLQDLLQFIFQLIEDNIKQLKEMKFTYLIN 4327
            :::||||   .|.|:: :.:|:   :.|::.||..:|.:.|:...|..||.:..||..|    :.
Zfish  4236 KKILKDLRSAMKSAKDTIMQAMEEWEKLRSEEVFEDLMNYLKVYTQRAEDFLNSLKTEK----LE 4296

Human  4328 YIQDEINTIFSDYIPYVFKLLKENLCLNLHKFNEFIQNELQEASQELQQIHQYIMALREEYFDPS 4392
            .|...::.|:.:         ..||.: :.|..|:    ::||...|.::..:...:.:|.::..
Zfish  4297 EISSRVSGIYKE---------AGNLEV-MMKIREW----MKEAKIGLTELKDFSKGVVQELYNQM 4347

Human  4393 IVGWTVKYYELEEKIVSLIKNLLVALKDFHSEYIVSASNFTSQLSSQVEQFL 4444
            .:          ||:.|.:.:||:|::.:......|...|...|.|..|.::
Zfish  4348 SM----------EKLNSKLNDLLMAVESYIDSLFKSYLAFMKSLPSYTEPYV 4389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
APOBNP_000375.3 Heparin-binding 32..126 43/93 (46%)
Vitellogenin_N 46..597 CDD:460170 232/551 (42%)
Heparin-binding 232..306 33/74 (45%)
Vit_open_b-sht 632..937 CDD:462702 123/310 (40%)
Heparin-binding 902..959 19/56 (34%)
DUF1081 960..1071 CDD:461916 60/113 (53%)
OM_channels 1448..>1865 CDD:473880 128/417 (31%)
Heparin-binding 2043..2178 39/137 (28%)
235kDa-fam <2060..>2490 CDD:130673 131/430 (30%)
Heparin-binding 3161..3236 26/74 (35%)
Basic (possible receptor binding region) 3174..3184 4/9 (44%)
LDL receptor binding 3373..3393 7/19 (37%)
Heparin-binding 3383..3516 54/132 (41%)
Basic (possible receptor binding region) 3386..3394 2/7 (29%)
ApoB100_C 4494..4550 CDD:463606
apobaXP_694827.8 None
Blue background indicates that the domain is not in the aligned region.

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