DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment APOB and Apoltp

DIOPT Version :10

Sequence 1:NP_000375.3 Gene:APOB / 338 HGNCID:603 Length:4563 Species:Homo sapiens
Sequence 2:NP_995670.2 Gene:Apoltp / 34283 FlyBaseID:FBgn0032136 Length:4333 Species:Drosophila melanogaster


Alignment Length:4921 Identity:960/4921 - (19%)
Similarity:1648/4921 - (33%) Gaps:1594/4921 - (32%)


- Green bases have known domain annotations that are detailed below.


Human    18 LLLLLAGARA-EEEMLENVSLV----CPKDATRFKHLRK-YTYNYEAESSSGVPGTADSRSATRI 76
            ||||:|..:| .|..|::..:.    |...:.:|.:..: |.|.|.....:...|:.|:.|...:
  Fly    12 LLLLIAHTQAVRENPLKDPRICGRPQCDSKSAKFNYGEQLYKYQYTVAVRTEFAGSGDNSSDLLL 76

Human    77 NCKVELEVPQLCSFILKTSQC----TLKEVYGFNPEGKALLKKTK-------------------- 117
            ...:|:..|:.|...|:.:..    ||.|:   |.......:|||                    
  Fly    77 KSDLEIFFPKPCEGYLRINDAKLYDTLDEL---NDNESDSSEKTKEYDYYDNLANEESESQNYDN 138

Human   118 ---NSEEFAAAMSRYELKLAIPEGKQVFLYPEKDEPTYILNIKRGIISALL-------VPPETEE 172
               .|.:|...:::..|:.|..:|....:.|::.|..::||||:||:||..       |...|.|
  Fly   139 MHPKSSDFNVDLTKNLLRFAFHDGLISEVCPQEQETPWVLNIKKGILSAFQNTMMRFDVDANTTE 203

Human   173 AKQVLFLDTVYGNCSTHFTVKTRKGNVATEISTERDLGQCDRFKPIRTGISPLALIKGMTRPLST 237
            .       .|.|.|...:.::....:..| |...:|:..|.:.....:.:..........:.:..
  Fly   204 T-------DVSGQCQVQYALEDTDSSYVT-IRKTKDINSCRQRYATHSVLQTTPYTFRDDKTIWP 260

Human   238 LISSSQSCQYTLDAKRKHVAEAI-CKEQHLFLPFSYKNKYGMVAQVTQTLKLEDTPKINSRFFGE 301
            ::.|...|..|:|   .:|.:.| |.|.||.:|||..:. |.:...|..|||:.....::..|.|
  Fly   261 ILKSQSHCNLTID---NNVYKEIKCLETHLLVPFSNASS-GALTTSTSRLKLDGVESYSAGEFLE 321

Human   302 GT-----KKMGLAFESTKSTSPPKQAEAVLKTLQEL--KKLTISEQNIQR--ANLFNKLVTELRG 357
            ..     ::..|.|:.|.:..|   :...:|..:||  :...:...||||  .::|...:...:.
  Fly   322 QNPELVERRATLVFDHTPAVKP---SHDEIKAARELLVEMCRVGFPNIQREFIDVFTNFLQTSKS 383

Human   358 LSDEAVTSLLPQLIEVSSPITLQALVQCGQPQCS---THILQWLK--------RVHANPLLIDVV 411
            |..:                ||..|:|.....|.   .|:|:.|.        :|..:.::.:.:
  Fly   384 LDYK----------------TLSVLLQRSASTCEQGRNHLLESLPFIGSTASYKVMRDQIINEKL 432

Human   412 T------YLVAL--IPEPSAQQLREIFNMARDQRSR--------ATLYALSHAVNNYHKT--NPT 458
            |      ::.||  |..|..:.|....::....::|        ||  |:.|:...:|:.  ...
  Fly   433 TKQMAHDWMTALSFITRPDEETLETFHSILEYAKNRLDAEYTLGAT--AVVHSFCKHHEACEENL 495

Human   459 GTQELLDIANYLMEQIQDDCTGD---EDYTYLILRVIGNMGQTMEQLTPELKSSILKCVQSTKPS 520
            ..|:::::.......:.:...|:   .:...::|:.:||:|........:|:    ..::..:..
  Fly   496 RVQQIINLLETEFLNLYNLFKGERRTRERMVILLKGLGNIGVVSSAFAEQLQ----WIIREDEAP 556

Human   521 LMIQKAAIQALRKMEPKDKDQEVLLQTFLDDASPGDKRLAAYLMLMRSPSQADINKIVQILPWEQ 585
            :.|:...|.|.|:::.. :.:...|..:.:.....:.|:.:||..||.|....:..|..||..|:
  Fly   557 VDIRLHGILAFRRVDCA-RHRSYFLDNYGNYTLNSELRIYSYLQAMRCPDYISVGVIKSILEHEE 620

Human   586 NEQVKNFVASHIANILNSE---ELDIQDLKKLVKEALKESQLPTVMDFRKFSRNYQLYKSVSLPS 647
            ..||.:||.||:.|:..|.   .::.|.|  |:.:.|.|.   ..||.|||||||:  .|:....
  Fly   621 INQVGSFVWSHLTNLAKSNSPVRIEAQGL--LLNDELSER---FKMDIRKFSRNYE--HSLFFDE 678

Human   648 LDPASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGFFP 712
            .: .....:.|:||..::|||:.:.:..|...|| .|.:..|.....:|.|......||.:|  |
  Fly   679 YN-FGTTTDANVIFGTDSYLPRIASVNFTADLFG-QSVNFFEFTARAEGLEELAANAFGPKG--P 739

Human   713 DS---VNKALYWVN-------GQVPDGVSKVL-VDHFGYTK--------------DDKHEQDMVN 752
            .|   :.|.|.::|       .:..|.:..:| :|:....:              :|...::.:.
  Fly   740 LSGQLLRKKLSFLNRWLGNESAEEDDTLENLLSLDNLRLKRKAQEQARASEEEVDEDYDFEESLE 804

Human   753 G---------------IMLSVEKLIKDLK-SKEVPEARAYLRILGEELGFASLHDLQLLGKLLLM 801
            |               |..:|:.|...|| ....|.|:..||:.|.:|.:   .:::.|.:::.:
  Fly   805 GNKRQKRDVSTTRKQEIDRNVDSLGYKLKYDYNNPRAQFGLRVFGNDLRY---FNVESLVEVMAL 866

Human   802 GARTLQGIPQMIGEVIRKGSKNDFFLHYIFMENAFELPTGAGLQLQISSSGVIAPGAKAGVKLEV 866
            .|:.   .|....:.:..|.:..:....:|::.::.:|...||.|.|.:.|.      :.:.|.|
  Fly   867 AAKF---NPFQQAKNVLSGKEFTYTKSRVFLDASYTVPLAVGLPLAIHAFGA------SSIDLRV 922

Human   867 A------------NMQAELVAKPSVSVEFVTNMGIIIPDFARSGVQMNTNFFHESGLEAHVALKA 919
            :            :...|...||||||:.:|.|...: .:.:||:::.:|.:..|.|.|.:.::.
  Fly   923 SGNLDEMDPPTDWHFDVEGQFKPSVSVDVITTMQTDM-FWEQSGIKVKSNLYSNSELVAKLKVRG 986

Human   920 GKL---KFIIPSPKRPVKLLSGGNTLHLVSTTKTEVIPPL-IENRQ-----SWSVCKQVFPGLNY 975
            ..|   .|.:|..|..:..:..    .|:...:.|.:|.. |.||.     :|.|..|.. ||..
  Fly   987 RNLVSFSFDLPRDKNEIFSVRS----ELLVQKREEQLPQAGIANRSANSTCTWPVLDQAI-GLQM 1046

Human   976 CTSGAYSNASSTDSASYYP---LTGDTRLELELRPTG-EIEQYSVSATYELQREDR--ALVDT-- 1032
            |:.  ||....:::...||   |.|.....|.|:.:. ..::|.....::.|.||.  :||.|  
  Fly  1047 CSH--YSVPDLSNATEIYPSLLLAGPLNFSLILKKSDLSAKKYVFEYKWDQQEEDNNFSLVFTTP 1109

Human  1033 --------LKFVTQAEGAKQTEATMTFKYNRQSMTLSSEVQIPDF-------------DVDLGTI 1076
                    :..||:...|...........||.|...|.:.. |||             .:|||..
  Fly  1110 GSKVPRVLVANVTKVPDAFNASVAFVNGPNRVSAGCSYDGN-PDFRRLDIYLDTNGNRSLDLGME 1173

Human  1077 LRVNDESTEGKTSYRLTLDIQNKKITEVA----------LMGH---LSCDTKE-ERKIKGVISIP 1127
            ||.:.:.|....:.|:.|.|....||.:|          :..|   ||.:||: :..|||.:   
  Fly  1174 LRRHQDFTAWIYNPRMLLAINGVNITGLAGTVKVNEKNGIKQHDVDLSFETKKLQAVIKGNV--- 1235

Human  1128 RLQAEARSEILAHWSPAKLLLQMDSSATAYGSTVSKRVAWHYDEEKIEFEWNTGTNVDTKK--MT 1190
                 .:|||                .|:...|:..|...:..|| |.|......|.|..|  ..
  Fly  1236 -----VQSEI----------------TTSTNMTIKYRFQANKIEE-INFAGKLVNNGDKSKTEYR 1278

Human  1191 SNFPVDLSDYPKSLHMYANRLLDHRVPQTDMTFRHVGSKLIVAMSSWLQKASGSLPYTQTLQDHL 1255
            .|..:..|.|||                  :.|        .:.|:||           :||.|.
  Fly  1279 GNMKLQTSAYPK------------------LNF--------ASESTWL-----------SLQGHT 1306

Human  1256 NSLKEFNLQNMGLPDFHIPEN------LFLKS---DGRVKYTLNKNSLKIEIPLPFGGKSSRDLK 1311
            ..:..:|    ..||:..|..      :|.:|   |..:..|..:.||::::|     :|..|.:
  Fly  1307 EGMITYN----NAPDYVNPNYTSLVRLIFARSHSEDSFLDGTQTRASLELKLP-----RSKIDYR 1362

Human  1312 ML----ETVRTPALHFKSVGF--------------HLPSREFQVPTFTIPKLYQLQVP------- 1351
            :|    |.::....|...||.              |||.|..    |.|.....:.||       
  Fly  1363 ILVKHKEHIKNGTEHNVIVGLKYTPEKEITGLFSVHLPRRNL----FAIDAYMNVTVPEFNSCTA 1423

Human  1352 LLGVLDLSTNVYSNLYN--WSASYS---GGNTSTDHFSLRARYHMKADSVVDLLSYNVQGSGETT 1411
            .|.|.:.:|..|....|  |...:|   ..|.......::|.:|:|  .:|:..|:|:. |....
  Fly  1424 SLKVNEKATKDYIIFINGSWFTGHSVAVKANYKDRSSRVQALHHLK--MIVESPSFNIT-SLNII 1485

Human  1412 YDHKNTFTLSCDGSLRHKFLDSNIKFSHVEKLGNNPVSKGLLIFDASSSWGPQMSASVHLDSKKK 1476
            |..|....          |.|...|:.      .:|.  ||.|..||::.....:|.|.|..|::
  Fly  1486 YRRKQLLI----------FYDIQAKYD------QDPY--GLTIQYASNAHNRNTNAEVRLKVKER 1532

Human  1477 QH-----LFVKEVKI-----------DGQFRVSSFYAKGTYGLSCQ------RDPN--TGRLNGE 1517
            .:     |..::.|:           |...:|..........||.:      |||:  .|.|   
  Fly  1533 DYWINAKLLSEQPKLLQLEIHMDKIRDVHIQVGLLNVDKRKELSLELKWDANRDPSQRLGLL--- 1594

Human  1518 SNLRFNSSYLQGTNQITGRYEDGTLSLTSTSDLQSGIIKNTASLKYENYELTLKSDTNG-KYKNF 1581
              ..:||   .||     ::.||.|.:|..        :.|....:.::       |.| ||   
  Fly  1595 --AEYNS---PGT-----KHYDGNLMITYP--------ERTIHFGFNSF-------TGGPKY--- 1631

Human  1582 ATSNKMDMTFSKQNALLRSEYQADYESLRFFSLLSGSLNSHGLELNADILGTDKINSGAH---KA 1643
              ..|:..::| .|.::..||:|            |.|..|.|                |   ||
  Fly  1632 --FGKVHASWS-INEVIEFEYEA------------GILPGHTL----------------HNWVKA 1665

Human  1644 TLRIGQDGISTSATT----NLKCSLLV---------------LENELNAELGLSGASMKLTTNGR 1689
            .||...||...::..    :||..:||               .:::.:....|....::...|..
  Fly  1666 ELRTPFDGWRVNSLDAGIYSLKNLILVNSTLFWADDQKLQVGYKSDYDVNDQLMSFDVRFGINST 1730

Human  1690 FRE-----HNAKFSLDGKAALTELSLGSAYQAMILGVDSKNIFNFKVSQEGLKLSNDMMGSYAEM 1749
            .|:     ...|..:|.|...|||.||.:.|.     |:.|.::...|.|..|  |....:|:.:
  Fly  1731 IRDIPTINVKVKHWMDVKKVDTELYLGYSGQN-----DTFNTYSMDSSWEIEK--NQRYNNYSGL 1788

Human  1750 KFDHTNS----LNIAGLSLDFSSKLDNIYSSDKFYKQTVNLQLQPYSLVTTLNSDL-KYNALDLT 1809
            .  |..|    ....||...||.....:.|.    ..::|..|:.::|  |:|..: |:....||
  Fly  1789 V--HLVSPFKGYEKGGLVAHFSLSDQRVVSG----AASLNFDLREFTL--TMNGYVKKFTDNMLT 1845

Human  1810 NNGKLRLEPLKLHVAGNLKGAYQNNEIKHIYAISSAALSASYKADTVAKVQG-VEFSHRLN--TD 1871
            .|....||..     |.:...:..||.|........|.:|:...:.:|.::. :.|..:|:  |.
  Fly  1846 VNITTPLEKF-----GTINARFGLNEKKRHAVAEVRAPTAALGVEVLADIKNLLNFDVKLSVATP 1905

Human  1872 IAGLASA----------IDMSTNYNSDSLHFSNV--------FRSVMAPFTMTIDAHTNGNGKLA 1918
            |.....|          :||...:|:.:|.|:.|        |......||.......||     
  Fly  1906 IESFQQAAIFALFNPERVDMRGLWNNVTLGFTGVWHMQNITDFEYSYHVFTPLAGFEENG----- 1965

Human  1919 LWGEHTGQLYSKFLLKAEPLAFTFSHDYKGSTSHHLVSRKSISAALEHKVSALLTPAEQTGTWKL 1983
                        |:::                   |:.||.....|..|:|              
  Fly  1966 ------------FIVQ-------------------LLKRKEFVFQLHGKMS-------------- 1985

Human  1984 KTQFNNNEYSQDLDAYNTKDKIGVELTGRTLADLTLLDSPIKVPLLLSEPINIIDALEMR----- 2043
                   .|           |:||::.|...:||                :|.:.:.:|.     
  Fly  1986 -------NY-----------KLGVKINGEPKSDL----------------VNQLGSNKMELEMLY 2016

Human  2044 DAVEKPQEFTIVAFVKYDKNQDVHSINLPFFETLQEYFE--RNRQTIIVVLENVQRNLKHINIDQ 2106
            ||..||    :.|...|..:.|            :|||.  .|.|...:|...:..|   ::|.:
  Fly  2017 DADFKP----LNAETDYKPDAD------------EEYFSYFTNFQVDTLVWPTIVGN---VDIQE 2062

Human  2107 FVRKYRAALG--KLPQ---------QANDYLNSFNWERQVSHAKEKLTALTKKYRITENDIQIAL 2160
            .:..| ..:|  :|||         ...||:|..|           |..:|..:.:.:|...|..
  Fly  2063 IIDFY-LVVGHVELPQGKVEFKDRLHYPDYINVHN-----------LLTVTTPFAVAKNIKSIVE 2115

Human  2161 DDAKINFNEKLSQLQTYMIQFDQ-------------YIKDSY--DLHDLKIAIANIIDEIIEKLK 2210
            ....:|||....::: :::..|:             .::|:.  ..||:::.:..    ..|.|.
  Fly  2116 YHVDLNFNAFYERVK-FIVNDDKDNTQELGFVFNYTALQDNVKPKAHDVQVTLLT----PYEMLH 2175

Human  2211 SLDEHYHIRV-------NLVKTIHDLHL----FIENID------------------------FNK 2240
            .:..|.||.:       |:.......||    .|||.|                        |.|
  Fly  2176 EIYVHGHIELDDNAYKGNISAVTAHTHLSMAASIENEDNFLETSVGIQLETDAIPHYGCQVYFKK 2240

Human  2241 SGSSTASWIQNVDTKYQIRIQIQEK--LQQLKRHIQ---NIDIQHLA---GKLKQ-----HIEAI 2292
            ..|:       ||....||.::.:.  |.||  ||.   :.|..::.   |::|.     .:.:.
  Fly  2241 DFSA-------VDKAIDIRFEVTDNGTLNQL--HISTDWHTDPSYIVNANGRIKTTMLPLQMAST 2296

Human  2293 DVRV-------------LLDQLGTTISF-ERINDILEHVKHFVINLIGDFEVAEKINAFR-AKVH 2342
            .|.|             ||.|.|.:|:: .|.|.     |..|.|:    ||...:..|| ..:|
  Fly  2297 SVLVIQGQNPHLNFDLNLLSQNGQSIAYGARANK-----KKDVFNI----EVWTPMKNFRNISMH 2352

Human  2343 ELIER--------------------YEVDQQIQVL----MDKLVELAHQYKLKETIQKLSNVLQQ 2383
            ....|                    |||...:::.    :|.::.:..:...::.:.:|:     
  Fly  2353 GTAIRSPRDPGRYDVSGFLYRNMATYEVTGAVRMTNSLPIDVVLRVQPKAGGRDGVIELN----- 2412

Human  2384 VKIKDYFEKLVGFIDDAVKKLNELSFKTFIEDVNKFLDM-----LIKKLKSFDYHQFVDETNDKI 2443
                         |.:|..|....||.. ||| .|...|     :.|...:.|:...|:.|..:|
  Fly  2413 -------------IHEAGPKKIRFSFSA-IED-GKMCQMSGGYSVSKTNGAMDFSVLVESTEPEI 2462

Human  2444 REVT----------QRLNGEIQALELPQKAEALKL--------FLEETKATVAVY---------- 2480
            ..:.          ..|.|:: :||.|.||..:..        ||.:....|..|          
  Fly  2463 ARINFYGNLSPNSEGSLVGDL-SLETPWKALGIDTVHLHSDVGFLNKGGHIVGEYKIGQYIGRGS 2526

Human  2481 -------LESLQDTKITLIINWLQEALSSASLAHMKAKFRETLEDTRDRMYQMDIQQELQRYLSL 2538
                   .|.:|    .::.|:|:...:...:.|..||::..                       
  Fly  2527 CLWSWILAEDMQ----LVLENYLERPNAKPRIVHASAKYQNP----------------------- 2564

Human  2539 VGQVYSTLVT----YISDWWTLAAKNLTDFAEQYSIQDWAKRMKALVEQGFTVPEIKTILGTMPA 2599
             ||.::.|..    .:...|.|   ::...||..|:.|:..|:         :..:...:|....
  Fly  2565 -GQTFTQLQAGGRLSVDSKWNL---DVNGSAEYKSVDDFKFRV---------ITALPLPVGDRHQ 2616

Human  2600 FEVSLQA-LQKATFQTPDFIVP------------LTDLRIPSVQINFKDLKNI------------ 2639
            ...|.|. :....|..|||::.            |:.:...:...|.|.|.::            
  Fly  2617 LSASYQGNVISQQFNNPDFVLEASYESFEAQNKLLSRISYKNATNNLKGLGHVEWGKIQNLSVVE 2681

Human  2640 -------------KIPSRFSTPEFTILNTFHIP-SFTIDFVEMKVKIIRTIDQMLNSELQWPVPD 2690
                         :..::..||:|...:||.:. |:.::         ::....:...|.:|. .
  Fly  2682 GDFELLHKQGAQREFSAKIITPKFKNEHTFALTGSYDLE---------KSGHHNVVGSLDYPA-S 2736

Human  2691 IYLRDLKVEDIPLARI------TLPDFRLPEIAIPEFIIPTLNLNDFQVPDLHIPE----FQL-- 2743
            ..:.||.|....|:.:      |||.|........:|...|.|...::......|:    |:|  
  Fly  2737 RRITDLDVSVSSLSNMHGIFNSTLPTFLNVSWLKTDFNFTTNNGKSYRYCRCFWPQDTAYFKLNS 2801

Human  2744 ------PHISHT------IEVPTFGK-----LYSILKIQSPLFTLDANADIGNGTTSANE----- 2786
                  .:.:|.      ||||...:     :|.:.|.:        |.|.||.....||     
  Fly  2802 NYDSDSSNFNHNLNGNVEIEVPLATRHRADIVYGLQKRR--------NQDAGNVKVVYNEKQVLD 2858

Human  2787 ----------AGIAASIT-AKGESKLEVLNFDFQANAQLSNPKINPLALKESVKFSSKY-LRTEH 2839
                      |.|....| ...|::::.|...|.:....|:|     |..:.||....| ||...
  Fly  2859 GKYKRLEQAKAPIYKETTDISLENEVKPLGIHFVSTRDASDP-----AGSQDVKHIEIYELRNTQ 2918

Human  2840 GSEMLFFGNAIEGKSNTVASLHTEKNTLELSNGVIVKINNQLTLDSNTKY---------FHKLNI 2895
                         ..|....||: :.||:..:..:|.|:....:..:|||         .|.   
  Fly  2919 -------------NFNLTGELHS-RATLKAQDFKVVAIHPNRAVVLSTKYEDVSPEVVRHHS--- 2966

Human  2896 PKLDFSSQA------DLRN-------------EI----KTLLKAGHIAWTSSGKGS--------- 2928
             ||:.|..|      :|.|             ||    :.|..:|....|.:...|         
  Fly  2967 -KLELSETAWIGYNLELGNFSKVGNESQSFALEIFYPKRNLSSSGQYYMTDTNFNSDLSFQWLGG 3030

Human  2929 --------------WKWACPRFSDEGTHESQISFTIEGPLTSFGLSNKINSK--HLRVNQNLVYE 2977
                          || |.|....:..|.: |:.|:..||    |...||.|  :.|..::|:..
  Fly  3031 NYDQQPKIIHSNLQWK-AEPLHRGDREHRT-IALTVAHPL----LEKDINCKATYYRGLRDLLRT 3089

Human  2978 SGSLNFSK-----LEIQSQVDSQH--VGHSVLTAKGMALFGEGKAEFTGRHDAHLNGKVIGTLKN 3035
            ..::::|:     :|:.:|:..::  :||:..|   ..::|:   ......|..|||.:  ...|
  Fly  3090 HLTIDYSEYPDQLIELGAQLTDRYSELGHTNYT---FHVYGK---HIASELDVQLNGTL--AAMN 3146

Human  3036 SLFFSAQPFEITASTNNEGNLKVRFPLRLTGKIDFLNNYALFLSPSAQQASWQVSARFNQYKYNQ 3100
            |.:.:    |.||....:     .||.|          |..||      |...|:.|..:|:...
  Fly  3147 SYYKT----ESTAHYKRD-----IFPAR----------YGKFL------ALLDVNKRELEYERQS 3186

Human  3101 NFSAGNNENIMEAHVGINGEANLDFLNIPLTIPEMRLPY-----TIITTPPLK------------ 3148
            .|.|      :..|:                :|.:|.|.     ||..||...            
  Fly  3187 PFHA------VRLHL----------------LPTIRYPIYGLNATIWDTPDTNHSGYIYMDILER 3229

Human  3149 ----DFSLWEKTG----LKEFLKTTKQSF-------------DLSVKAQYKKNKHRHSITNPL-- 3190
                ||:|.|...    :..::..|:.:|             |:|   .|.|..|...||...  
  Fly  3230 YARMDFNLTEDASQNLQMVGYIPDTRSAFLDIWRNYEEIRVIDVS---SYLKMNHSRLITGRFHW 3291

Human  3191 -AVLCEFISQSIKSFDRHFEKNRNNALDFVTKS-YNETK----IKFDKYKAEKSHDELPRTFQIP 3249
             ..:.:.:.:.|::..:....:.:..:||..|| |.||.    :.::..| |.:.|.:....|:.
  Fly  3292 RPSIRQEVREKIQAVGKSVYSSFSEGIDFWIKSIYTETTESMGVVWNTAK-EYNRDFIDDIGQLS 3355

Human  3250 GYTVPVVNV--------EVSPFTIEMSAFGYVFPKAVSMPSFSILGSDVRVPSYTL-ILPSLELP 3305
            .....:.::        |.:.|.|:                        .|.::|| ||..|.: 
  Fly  3356 VLEEDLADLRLFVNQSYEANDFYIK------------------------NVVNFTLTILDELAI- 3395

Human  3306 VLHVPRNLKLSLPD-FKELCTISHIFIPAMGNITYDFSFKSSVITLNTNAELFNQSDIVAHLLSS 3369
                 |:...|||. |.||.       .|||:  ...:.::|::.|            :..:.::
  Fly  3396 -----RDHIESLPKIFSELW-------QAMGD--SGKALRNSIVWL------------IETIKTT 3434

Human  3370 SSSVIDALQYKLEGTTRLTRKRGLKLATALSLSNKFVEGSHNSTVSLTTKNMEVSVATTTKAQIP 3434
            .::::||:.....|.: |....|| |...::..:.|::..|...:.. .:|:.....|..:....
  Fly  3435 YNNLLDAVARFFHGES-LVYISGL-LEKGIAKYDSFIKDLHIKFIKY-IENLWHKTWTLAENHWK 3496

Human  3435 ILRMNFKQELNGNTKSKPTVSSSMEFK-YDFNSSMLYSTAKGAVD--HKLSLESLTS-YFSIESS 3495
            .:...|:..|               || ..|..:..::.:|...|  :|.:.|...| ||:..||
  Fly  3497 AVLKRFEPHL---------------FKMISFIETTAWNLSKEVFDFIYKRTNELAESPYFNKVSS 3546

Human  3496 TKGDVKGSVLSREYSGTIASEANTYLNSKST-------RSSVKL-----QGTSKIDDIWNLEVKE 3548
            ...|.:     |.|....|::|.|.:...||       ....||     :....:.:||. |:||
  Fly  3547 FTADAE-----RLYRDFKANDAITNIKKYSTIAWNFVKEKYFKLVPFGAELNEVLTEIWQ-EIKE 3605

Human  3549 ---NFAGEATLQRIYSL-----WEHSTKNHLQLE-------GLFFTNGEHTSKATLELSPWQMSA 3598
               ....:..:|:.|.:     |   ..:.||||       ||......:.:...||.:.....|
  Fly  3606 LEKIDQVQIMVQKYYEVMAKVDW---VADELQLEHRLHQVYGLVRNKFRNYAMNALETADMYREA 3667

Human  3599 -----------LVQVHASQPSSFHDFPDLGQEVALNANTKNQKIRWKNEVRIHSGSFQSQVELSN 3652
                       ::.:....|.|:|         |.|...:.::|. :.:|...:.||.|:...|.
  Fly  3668 KTKFVFDPEVGIIDLEQKLPMSWH---------AFNETPRFEEIP-EYQVLAKAQSFFSETNSSI 3722

Human  3653 DQE----KAHLDIAGSLEGHLRFLKNIILPVYDKSLWDFLKLDVTTSIGRRQHLRVSTAFV---- 3709
            ..:    :.|||           .|..:.|.|.::|          .|..|.::.....:|    
  Fly  3723 VMKLYNMRTHLD-----------PKTWLPPYYSRAL----------LIDSRHYMTFDQRYVGLNL 3766

Human  3710 -YTKNPNGYSFSIPVKVLADKFIIPGLKLNDLNSVLVMPTFHVPFTDLQVPSC----------KL 3763
             :.:..||.|.|....:||..|                  |...||.|..|:.          ||
  Fly  3767 NFDELGNGRSTSQCSYLLAHDF------------------FKRNFTLLLEPASKSLAGQGLTRKL 3813

Human  3764 DF----REIQIYKKLRTSSFALN---LPTLPEVKFPEV------DVLTKYSQPEDSL-------- 3807
            .|    :.|:|  .|.|...::|   .|.|| :|..:|      |||:..|..|.||        
  Fly  3814 SFIANGQLIEI--DLETDHISINGNPQPILP-LKLGDVNIHRDLDVLSITSDTEFSLHCNVQFDL 3875

Human  3808 ----------------------IPFFEITVP------ESQLTVSQFTL--------------PKS 3830
                                  .|:.|.|:.      |:||....::|              .:.
  Fly  3876 CWFEVSGWYFGRTAGLLGTLNNEPYDEYTMSSGVISNETQLFTDSWSLKQCRQNKLAQTQEVSQE 3940

Human  3831 VSD--------GIAA---------------LDL---------------NAVANKIADFELPTII- 3856
            |||        ||.|               :||               .|.|..:|..|..|.: 
  Fly  3941 VSDACTSFFRTGILATCSAVLDPTPFYEMCMDLGMKSPPIRKGHPAVKGACAAALAYIEACTALK 4005

Human  3857 ----VPEQTI--------EIPSIKFSVPAGIVIPSFQALTARFEVDSPVYNATWSASLKNKADYV 3909
                ||.|.:        .:|...|...:|..||....:.  |.|::...||....| ||....|
  Fly  4006 VPMRVPSQCVFCQLSNGSYVPEGTFMELSGPEIPKSSDVV--FIVEAKECNANLKTS-KNIMTVV 4067

Human  3910 ETVLDSTCSSTVQFLEYELNVLGTHKIEDGTLASKTKGT-FAHRDFSAEYEEDGKYEGLQEWEGK 3973
            .::.:...::.:....|.:...|.....|     |.:.. :.|.:|:::.|:...|.|       
  Fly  4068 SSIEEQLQAAKITNNRYAVVAFGGVSPYD-----KARSVIYEHNEFTSKPEQLADYFG------- 4120

Human  3974 AHLNIKSPAFTD----------LHLRYQKDKKGISTSAASPAVGTVGMD---------------- 4012
             |:|..:.:..|          |:.|....|..|..|.:..|...:..|                
  Fly  4121 -HINTGNGSSNDILMAISAAAKLNFRPGVSKTFILLSCSKCAARDMRFDYTSILQYLLEEGVNLH 4184

Human  4013 --MDEDDDF---SKWNFYYSPQSSPDKKLTIFKTELRVRESDEETQ 4053
              .|.:.||   .|...::    ..|.||...|   |..|.|.||:
  Fly  4185 ILADTEFDFERNKKLRHFF----GLDSKLVYSK---RFPEGDAETR 4223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
APOBNP_000375.3 Heparin-binding 32..126 22/125 (18%)
Vitellogenin_N 46..597 CDD:460170 124/627 (20%)
Heparin-binding 232..306 20/79 (25%)
Vit_open_b-sht 632..937 CDD:462702 76/360 (21%)
Heparin-binding 902..959 12/60 (20%)
DUF1081 960..1071 CDD:461916 32/144 (22%)
OM_channels 1448..>1865 CDD:473880 98/474 (21%)
Heparin-binding 2043..2178 31/152 (20%)
235kDa-fam <2060..>2490 CDD:130673 108/584 (18%)
Heparin-binding 3161..3236 18/95 (19%)
Basic (possible receptor binding region) 3174..3184 3/9 (33%)
LDL receptor binding 3373..3393 4/19 (21%)
Heparin-binding 3383..3516 27/136 (20%)
Basic (possible receptor binding region) 3386..3394 2/7 (29%)
ApoB100_C 4494..4550 CDD:463606
ApoltpNP_995670.2 LPD_N 49..633 CDD:214755 124/624 (20%)
Vit_open_b-sht 665..1005 CDD:462702 76/358 (21%)
DUF1081 1027..>1116 CDD:461916 22/91 (24%)
VWD 3741..3908 CDD:214566 41/197 (21%)
C8 3952..4014 CDD:214843 12/61 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.