DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsp60C and cct-2

DIOPT Version :9

Sequence 1:NP_608948.2 Gene:Hsp60C / 33796 FlyBaseID:FBgn0031728 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_741031.1 Gene:cct-2 / 174421 WormBaseID:WBGene00000378 Length:529 Species:Caenorhabditis elegans


Alignment Length:586 Identity:143/586 - (24%)
Similarity:245/586 - (41%) Gaps:125/586 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 RNYAKDVRFGPEVRAMMLQGVDVLADAVAVTMGPKGRNVII----EQSWGSPKITKDGVTVAKSI 84
            ::.|::.| |...|.....|...:.|.|..|:||||.:.|:    .:|.|..|:|.||.|:.|||
 Worm     8 KDNAQEER-GESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSI 71

  Fly    85 ALKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISRGASPVEI----RRGVM 145
            .:    .|..||::.|::...:.|.|||||:.||||..:.||..:.:::...|..|    ||.:.
 Worm    72 GV----DNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALG 132

  Fly   146 LAIETVK-------DNLR----RLSRPV-------NTPEEICQVATISANGDKSVGNLIS-EAIK 191
            :|.|::|       ||:|    :::|..       ...|...|:|..:....|..|||.: :.||
 Worm   133 IAQESLKKSSIESGDNIRDDLLKIARTTLGSKILSQHKEHFAQLAVDAVLRLKGSGNLDAIQIIK 197

  Fly   192 KVGRDGVITVKDGKTLCDE---LEVIEGM----KFDRGYI----SPYFINTSK----GAKVEFQD 241
            |:|  |.:    .::..||   ||.:.||    :.::..|    :|  ::|.|    |::|.. |
 Worm   198 KLG--GSM----NESYLDEGFLLEKLPGMFQPRRVEKAKILIANTP--MDTDKVKVFGSRVRV-D 253

  Fly   242 ALLLFCEKKIKSAPSIVPALELANAQRKPLVIIAEDLEAEALSTLVVN---RLKVGLQVCAVKAP 303
            .:....|         :.|.|....:.|...|:|.:........|:.|   :|....:|.|::..
 Worm   254 GVAKVAE---------LEAAEKLKMKEKVDKILAHNCNVFINRQLIYNYPEQLFADAKVMAIEHA 309

  Fly   304 GFGDNRKENLMDMAVATGGIVFGDEANMVRLEDIKMSDFGR---VGEVVVSKDDTMLLKGKGQKA 365
            .|     |.:..:|:..||.:      :...:..:.:.||.   :.|:::.:|  .||:..|.| 
 Worm   310 DF-----EGIERLALVLGGEI------VSTFDSPQTAQFGSCDLIEEIMIGED--RLLRFSGVK- 360

  Fly   366 EVEKRVEGLREAIKESTSSYEKEKMQERLARLSSGVALLRVGGSSDVEVSEKKDRVIDALNATRA 430
                    |.||..                      .:||  |::...:.|.:..:.|||.....
 Worm   361 --------LGEACS----------------------VVLR--GATQQILDESERSLHDALCVLVT 393

  Fly   431 AVEEG-IVPGGGTA--LLRCIQKLNDLKGANEDQNMGIEIIRRALRMPCLTIAKNAGVDGAMVVA 492
            .|:|. .|.|.|.:  |:.....:...|.|.::. :.:|...|||......|..|||:|.|.:|.
 Worm   394 HVKESKTVAGAGASEILMSSAIAVEAQKVAGKEA-LAVEAFGRALAQLPTIICDNAGLDSAELVT 457

  Fly   493 KV--EILDG--DYGYDALKGEYGNMIERGIIDPTKVVRTAISDAAGVASLLTTAEAVVTELPLEE 553
            ::  |..:|  :.|.|..|||..::.:.|:|:...|....:|.||.....:...:.::...|...
 Worm   458 RLRAEHANGRHNMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDIIKAAPRAR 522

  Fly   554 A 554
            |
 Worm   523 A 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsp60CNP_608948.2 PTZ00114 23..553 CDD:185455 142/583 (24%)
GroEL 28..548 CDD:239460 140/574 (24%)
cct-2NP_741031.1 chap_CCT_beta 5..522 CDD:274082 142/583 (24%)
TCP1_beta 6..520 CDD:239452 141/581 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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