DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsp60C and cct-3

DIOPT Version :9

Sequence 1:NP_608948.2 Gene:Hsp60C / 33796 FlyBaseID:FBgn0031728 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_494218.2 Gene:cct-3 / 173581 WormBaseID:WBGene00018782 Length:543 Species:Caenorhabditis elegans


Alignment Length:546 Identity:114/546 - (20%)
Similarity:224/546 - (41%) Gaps:102/546 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 GPEVRAMMLQGVDVLADAVAVTMGPKGRNVIIEQSWGSPKITKDGVTVAKSIALKDKFQNIGAKL 97
            |.:|:...:.....:||.:..::||:....::....|...:|.||..:.:.|.:|    :..||.
 Worm    21 GHQVQIGNINACKTIADVIRTSLGPRAMLKMLMDPMGGIVMTNDGNAILREITVK----HPAAKS 81

  Fly    98 VQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISRGASPVEIRRGVMLAIE-TVKDNLRRLSRP 161
            :.::|...:||.|||||:..:||..:.......:.:...|..|.:....|:| .::.:..:.|:.
 Worm    82 MIEIARTQDEETGDGTTSVIILAGEVMAHAQTYLEQKTHPTLIIKAYRQALEDMIQWSENKFSKT 146

  Fly   162 VNTPEEICQVATI--SANGDKSVG-------NLISEAIK--KVGRDGVITVKDGKTLC------- 208
            |:..:: .::|.:  |..|.|.:.       |:..:|:|  :|.:.||..: |.|..|       
 Worm   147 VDITDD-AEIAKVVKSCLGTKMISKWMDLAVNISIQAVKTIRVEKAGVREI-DIKRYCRIEKIPG 209

  Fly   209 ---DELEVIEGMKFDRGYISPYFINTSKGAKVEFQDALLLFCEKKIKSAPSIVPALELANAQRKP 270
               ::.:|::|:     .::...::.....::|....:||.|..:.|...| ..:||:...:...
 Worm   210 GRIEDSQVVKGI-----VVNKDILHAKMRRRIENPRIVLLDCNLEYKKGES-QTSLEIMREEDIS 268

  Fly   271 LVIIAEDLEAEALSTLVVNRLKVGLQVCAVKAPGFGDNRKENLMDMAVATGGIVFGDEANMVRLE 335
            .::..|:.........:: :||..|   .....|..|..:..|:             :|.:..|.
 Worm   269 AILEQEEQAIRKQCDEII-KLKPDL---VFTEKGISDLAQHFLL-------------KAGITCLR 316

  Fly   336 DIKMSDFGRVGEVVVSK--DDTMLLKGK--GQKAEVEKRVEGLREAIKESTSSYEKEKMQERLAR 396
            .:|.:|..|:..|..::  .||..|:.:  |.||:       |.|.:|.:...|...     .|.
 Worm   317 RLKKTDNNRLARVCGARVVHDTSDLRDEDVGTKAQ-------LFEVVKIADEYYTYV-----TAE 369

  Fly   397 LSSGVALLRVGGSSDVEVSEKKDRVIDALNATR-AAVEEGIVPGGGTALLRCIQKLNDLKGANED 460
            .::...::..|.|.|| ::|.:..:.|:|:..| ..:...:||||| ||...:.:..:.:||..|
 Worm   370 TTTACTVVLRGPSKDV-INEVERNLQDSLHVVRNIMINPKLVPGGG-ALEMALSREIEQQGAKMD 432

  Fly   461 Q---------NMGIEIIRRALRMPCLTIAKNAGVDGAMVVAKVEIL---------DGDYGYDALK 507
            .         .:.:|:|.|.|...|          |...:.|:..|         :..:|.|...
 Worm   433 GVKKWPYKAIGLALEVIPRTLIQNC----------GGSTIRKMTELRAIHAQNAENWTFGVDGTS 487

  Fly   508 GEYGNMIERGIIDP----TKVVRTAI 529
            |:..:|.:..|.||    .:|::|||
 Worm   488 GDLVDMNKLEIWDPLAVRIQVLKTAI 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsp60CNP_608948.2 PTZ00114 23..553 CDD:185455 114/546 (21%)
GroEL 28..548 CDD:239460 114/546 (21%)
cct-3NP_494218.2 chap_CCT_gamma 8..531 CDD:274085 114/546 (21%)
TCP1_gamma 8..528 CDD:239453 114/546 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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