DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-theta and Chl1

DIOPT Version :9

Sequence 1:NP_723103.1 Gene:DIP-theta / 33795 FlyBaseID:FBgn0051646 Length:606 Species:Drosophila melanogaster
Sequence 2:XP_038964701.1 Gene:Chl1 / 89828 RGDID:620122 Length:1224 Species:Rattus norvegicus


Alignment Length:703 Identity:142/703 - (20%)
Similarity:230/703 - (32%) Gaps:252/703 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 SLALPGCAAQESDDEGELHHLD-QMHHQHQDFIIGESEEHDHIAHHLAEMQNKDELLEDIRED-- 118
            |:.|| |...:......::.:: ::.|..||..:..|::.|   .:.|.::.||.     |.|  
  Rat   147 SIVLP-CNPPKGHPPLHIYWMNIELEHIEQDERVYMSQKGD---LYFANVEEKDS-----RNDYC 202

  Fly   119 ---------TVVNAIPEK----------DLPKFGEL-----------------------LQNVTV 141
                     |:|..:|.|          |.....|:                       ..:.||
  Rat   203 CFAAFPKLRTIVQKMPMKLTVNSLKHANDSSSSTEISNQANSIKQRKPKLLLPPAQIGSASSKTV 267

  Fly   142 PVSREAVLQCVVDNLQTYKIAWLRVDTQTILTIQNHVITKNHRMSITHAEKRAWILRIRDVKESD 206
            ......:|:|..:.|.|.:|.|.::.::         :.|. |.:|...||   .|:|.:|...|
  Rat   268 LKGDTLLLECFAEGLPTPQIEWSKLGSE---------LPKG-RATIEIHEK---TLKIENVSYQD 319

  Fly   207 KGWYMCQINTDPMKSQVGYLDVVV--PPDILDYPTSTDMVIREGSNVTLKCAATGSPTPTITWRR 269
            :|.|.|..|....|:...: .|:|  ||.....|.|.  |...|||..|.|.|.|.|.|||.||.
  Rat   320 RGNYRCTANNLLGKASHDF-HVIVEEPPRWKKKPQSA--VYSTGSNGILLCEAEGEPQPTIKWRV 381

  Fly   270 EGGELIPLPNGAEAVAYNGSFLTIAKVNRLNM-----GAYLCIASNGIPPTVSKRVML-IVHFPP 328
            .|   :|:.|.    .:.|..:...:::..|:     ..|.|.||| |..|:.....: :|...|
  Rat   382 NG---LPIENH----PFPGDVMFPREISFTNLQPNHTAVYQCEASN-IHGTILANANIDVVDVVP 438

  Fly   329 MIWIQNQ-----LVGAALTQNITLECQSEAYPKSINYW-MKNDTIIVPGERFVPETFESGYKITM 387
            :|..:|:     :||    .:..|.|:..|.||:...| :.::|..:.|.|:  .|.|:|     
  Rat   439 LIQTKNEENYETVVG----YSAFLHCEYFASPKATVVWEVADETHPLEGGRY--HTHENG----- 492

  Fly   388 RLTIYEVDIQDFGAYRCVAKNSLG--------DTDGAIKLYHIPQTTTMTTMAPTVSINTVPVVL 444
            .|.|.....:|.|:|.|...|::|        |...|.||...|:..            .:|   
  Rat   493 TLEIERTTEEDAGSYSCWVDNTMGKAVITANLDIRNATKLRVFPKNP------------RIP--- 542

  Fly   445 VKYNKEQRYGSSQNSNTNPYNF-----NPGNSQQNTKLQRGK----------SNSKGSDQ----- 489
             |.:..:.|..||..:...::.     ..|.:.:....:.|:          ||..|.||     
  Rat   543 -KSHVLELYCESQCDSHLKHSLKLSWSKDGEAFEMNGTEDGRIVIDGANLTISNISGEDQGIYSC 606

  Fly   490 -------SPSGLNNVFV-----------------GATSSLWNSQDHHSSSSS------------- 517
                   |.||...|.|                 .:....|.:.|.|:|..|             
  Rat   607 SAQTALDSTSGKTQVTVLGVPDPPRNLLLSERQNRSVRLSWEAGDDHNSKISEYIVEFEGNREEP 671

  Fly   518 ------------------------------------SSSASSRGRDHHQ--------QQHH---- 534
                                                ..|.||:..|||:        ..|:    
  Rat   672 GKWEELTRVRGEETDVVLPLAPYVRYQFRVTAVNEVGKSHSSQPSDHHETPPAAPDKNPHNIRVQ 736

  Fly   535 ---------------QQQQQNHGSDHGASYRSDG-----KSPHLTNHDAKSLT 567
                           ..:|...|.::..|::..|     :...:|||..:.:|
  Rat   737 ASQPKEMIIKWEPLKSMEQNGPGLEYRVSWKPQGAPEEWEEETVTNHTLRVMT 789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-thetaNP_723103.1 Ig 137..230 CDD:299845 23/92 (25%)
IG_like 137..230 CDD:214653 23/92 (25%)
IG_like 240..324 CDD:214653 27/89 (30%)
IGc2 247..310 CDD:197706 21/67 (31%)
Ig 327..419 CDD:299845 27/105 (26%)
IG_like 343..420 CDD:214653 23/85 (27%)
Chl1XP_038964701.1 Ig 34..125 CDD:416386
Ig strand A 34..38 CDD:409353
Ig strand A' 43..47 CDD:409353
Ig strand B 52..59 CDD:409353
Ig strand C 65..70 CDD:409353
Ig strand C' 73..75 CDD:409353
Ig strand D 81..84 CDD:409353
Ig strand E 89..93 CDD:409353
Ig strand F 104..112 CDD:409353
Ig strand G 115..125 CDD:409353
IgI_2_L1-CAM_like 134..224 CDD:409432 18/85 (21%)
Ig strand B 148..152 CDD:409432 2/4 (50%)
Ig strand C 162..166 CDD:409432 0/3 (0%)
Ig strand E 185..189 CDD:409432 1/6 (17%)
Ig strand F 200..205 CDD:409432 1/4 (25%)
Ig strand G 216..219 CDD:409432 0/2 (0%)
Ig 261..343 CDD:416386 23/95 (24%)
Ig strand B 273..277 CDD:409353 1/3 (33%)
Ig strand C 286..290 CDD:409353 1/3 (33%)
Ig strand E 308..312 CDD:409353 2/6 (33%)
Ig strand F 322..327 CDD:409353 2/4 (50%)
Ig strand G 335..338 CDD:409353 0/2 (0%)
Ig4_L1-NrCAM_like 347..434 CDD:409367 28/96 (29%)
Ig strand B 363..367 CDD:409367 1/3 (33%)
Ig strand C 376..380 CDD:409367 2/3 (67%)
Ig strand E 399..403 CDD:409367 0/3 (0%)
Ig strand F 413..418 CDD:409367 2/4 (50%)
Ig strand G 426..429 CDD:409367 0/2 (0%)
Ig 447..524 CDD:416386 22/87 (25%)
Ig strand A' 447..451 CDD:409353 0/3 (0%)
Ig strand B 454..463 CDD:409353 2/8 (25%)
Ig strand C 469..474 CDD:409353 1/4 (25%)
Ig strand C' 477..480 CDD:409353 1/2 (50%)
Ig strand D 485..490 CDD:409353 2/6 (33%)
Ig strand E 491..498 CDD:409353 3/11 (27%)
Ig strand F 505..513 CDD:409353 3/7 (43%)
Ig strand G 516..524 CDD:409353 1/7 (14%)
Ig 528..627 CDD:416386 21/114 (18%)
Ig strand A 528..534 CDD:409353 3/5 (60%)
Ig strand A' 537..542 CDD:409353 0/16 (0%)
Ig strand B 545..553 CDD:409353 1/7 (14%)
Ig strand C 564..568 CDD:409353 0/3 (0%)
Ig strand D 583..586 CDD:409353 0/2 (0%)
Ig strand E 589..593 CDD:409353 0/3 (0%)
Ig strand F 602..609 CDD:409353 0/6 (0%)
Ig strand G 616..620 CDD:409353 2/3 (67%)
FN3 627..716 CDD:238020 8/88 (9%)
fn3 730..811 CDD:394996 9/60 (15%)
FN3 832..926 CDD:238020
FN3 931..1026 CDD:238020
Bravo_FIGEY 1120..1201 CDD:404722
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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