DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-theta and lsamp

DIOPT Version :9

Sequence 1:NP_723103.1 Gene:DIP-theta / 33795 FlyBaseID:FBgn0051646 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_001034921.1 Gene:lsamp / 664692 ZFINID:ZDB-GENE-090108-1 Length:333 Species:Danio rerio


Alignment Length:295 Identity:96/295 - (32%)
Similarity:140/295 - (47%) Gaps:41/295 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 NVTVPVSREAVLQCVVDNLQTYKIAWLRVDTQTILTIQNHVITKNHRMSITHAEKRAWILRIRDV 202
            |:|:......|::|.||: :..|:|||  :...|:.......:.:.|:.:....:..:.|||:.|
Zfish    36 NITIRQGDTTVIRCYVDD-KVSKVAWL--NRSNIIFAGEDKWSLDPRVELVTQGQLEYSLRIQKV 97

  Fly   203 KESDKGWYMCQINTDPMK--SQVGYLDVVVPPDILDYPTSTDMVIREGSNVTLKCAATGSPTPTI 265
            ...|:|.|.|.|.|....  ||| ||.|.||..|  |..|.|:.:.|||||.|.|.|.|.|.|.|
Zfish    98 DVFDEGPYTCSIQTKQQSKTSQV-YLIV
QVPAII--YKVSEDITVNEGSNVALTCLANGRPDPAI 159

  Fly   266 TWRREGGELIPLPNGAEAVAYNGSFLTIAKVNRLNMGAYLCIASNGIPPTVSKRVMLIVHFPPMI 330
            |||.       |...|||:.. |.:|.|:.|.|...|.|.|.|||.:.....|.|.::|::||  
Zfish   160 TWRL-------LNPSAEALDV-GEYLEISGVVRSQAGRYECKASNDVS
TPDVKYVNVVVNYPP-- 214

  Fly   331 WIQN-QLVGAALTQNITLECQSEAYPKSINYWMKND---------TIIVPGERFVPETFESGYKI 385
            :|:: :....|:.|...|.|::.|.|:....|.:::         ||.|.|.|.|          
Zfish   215 YIKDVRSSETAVGQAGVLHCEASAVPQPEFEWYRDERRLSSSQSLTIQVSGSRTV---------- 269

  Fly   386 TMRLTIYEVDIQDFGAYRCVAKNSLGDTDGAIKLY 420
               |.:..|..:|:|.|.|||.|.||..:.::.||
Zfish   270 ---LVVANVTEEDYGNYTCVATNRLGVHNASVFLY 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-thetaNP_723103.1 Ig 137..230 CDD:299845 28/93 (30%)
IG_like 137..230 CDD:214653 28/93 (30%)
IG_like 240..324 CDD:214653 34/83 (41%)
IGc2 247..310 CDD:197706 28/62 (45%)
Ig 327..419 CDD:299845 27/101 (27%)
IG_like 343..420 CDD:214653 23/85 (27%)
lsampNP_001034921.1 Ig 34..124 CDD:299845 27/91 (30%)
IG_like 36..124 CDD:214653 27/91 (30%)
IG_like 134..197 CDD:214653 31/70 (44%)
IGc2 141..199 CDD:197706 30/65 (46%)
I-set 213..300 CDD:254352 27/101 (27%)
Ig 231..298 CDD:143165 22/79 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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