DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-theta and lrit3a

DIOPT Version :9

Sequence 1:NP_723103.1 Gene:DIP-theta / 33795 FlyBaseID:FBgn0051646 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_001122166.1 Gene:lrit3a / 558559 ZFINID:ZDB-GENE-080723-63 Length:636 Species:Danio rerio


Alignment Length:569 Identity:104/569 - (18%)
Similarity:172/569 - (30%) Gaps:255/569 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 RLIVATATAAVVSIICLSLALPGCAAQ-------ESDDEGELHHLDQMHHQHQDFIIGESEEHD- 96
            ||:||.     |.:.|.|:|.|.|.:|       .||..|.           :..:..:.:..| 
Zfish     3 RLLVAQ-----VLLGCWSVAQPFCPSQCTCVYHGRSDGTGS-----------RSVLCNDPDMSDI 51

  Fly    97 -----------------------HIAHHLAEMQ----------NKD-------ELLEDIRED-TV 120
                                   ...::|:|::          :.|       ::|.::|.| .:
Zfish    52 PVNVPLDTVKLRVEKTAVRRVPTEAFYYLSELRYLWITYNSITSVDPGSFYNLKVLHELRLDGNM 116

  Fly   121 VNAIP---EKDLPKFGEL-LQN---VTVPVSREAVLQCVVDNLQTYKIAWLRVDTQTILTIQNHV 178
            :...|   .|::|....| |.|   .:|||.....|         ..|.:|.:.:..:.|:.:.:
Zfish   117 IATFPWESLKEMPSLKTLDLHNNRLTSVPVEAAPYL---------INITYLDISSNKLTTLPSDL 172

  Fly   179 IT-----KNHRMSITHAEKRAWILRIRDVKESDKGWYM-CQINTDPMKSQVGYLDVVVPPDILD- 236
            :.     ...:.|...::|....|:       |..||. |:|:.....|::..:.||:...:|. 
Zfish   173 VDIWPPFSGIQPSANTSQKTVLGLQ-------DNPWYCDCRISKLIELSKMAGIPVVLMDQVLTC 230

  Fly   237 --------------------YPT----STDMVIREGSNVTLKCAATGSPTPTITWRREGGELIPL 277
                                .||    :|.:....||||.|:|.|.|.||||:.|....|.::  
Zfish   231 SGPEHLSGVLFQRAELDQCVKPTVMTSATKITSPLGSNVLLRCDANGFPTPTLLWTTADGSVV-- 293

  Fly   278 PNGAEAVAYNGSFLTIAKVNRLNMGAYLCIASNGIPPTVSKRVMLIVHFPPMIWIQNQLVGAALT 342
                                                                             
Zfish   294 ----------------------------------------------------------------- 293

  Fly   343 QNITLECQSEAYPKSINYWMKNDTII--VPGERFVPETFESGYKITMRLTIYEVDIQDFGAYRCV 405
                                 |:|::  .|||         |.:.:: |:::.:..:|.|.|||.
Zfish   294 ---------------------NNTVVQESPGE---------GVRWSI-LSLHSIVFKDAGDYRCK 327

  Fly   406 AKNSLGD--------TDGA--------IKLYHIPQTTTMTTMAPT----------VSINTVPVV- 443
            |||..|:        .||.        |.:...|:....||..||          ::|.|.||: 
Zfish   328 AKNVAGNAEAYITLSVDGVQPTTPFPPINITKQPEDQPTTTFTPTKMPLFTSLSPITITTRPVMT 392

  Fly   444 ----LVKYNKEQRYGSSQNSNTNPYNFNPGNSQQNTKLQRGKSNSKGSD 488
                |.........|..|.|  .|....|...||:   :.||.:.|.||
Zfish   393 TMPPLTTRKSPIPGGGVQRS--PPAGDKPAKVQQS---KNGKGSIKKSD 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-thetaNP_723103.1 Ig 137..230 CDD:299845 18/101 (18%)
IG_like 137..230 CDD:214653 18/101 (18%)
IG_like 240..324 CDD:214653 15/83 (18%)
IGc2 247..310 CDD:197706 14/62 (23%)
Ig 327..419 CDD:299845 19/109 (17%)
IG_like 343..420 CDD:214653 19/94 (20%)
lrit3aNP_001122166.1 LRR_8 81..141 CDD:290566 11/59 (19%)
leucine-rich repeat 83..106 CDD:275378 1/22 (5%)
LRR_4 107..145 CDD:289563 9/37 (24%)
leucine-rich repeat 107..130 CDD:275378 5/22 (23%)
LRR_8 129..>171 CDD:290566 11/50 (22%)
LRR_4 129..170 CDD:289563 11/49 (22%)
leucine-rich repeat 131..154 CDD:275378 7/31 (23%)
leucine-rich repeat 155..168 CDD:275378 2/12 (17%)
TPKR_C2 199..249 CDD:301599 8/49 (16%)
Ig 252..343 CDD:299845 33/188 (18%)
IG_like 261..343 CDD:214653 30/179 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.