DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-theta and cadm4

DIOPT Version :10

Sequence 1:NP_723103.1 Gene:DIP-theta / 33795 FlyBaseID:FBgn0051646 Length:606 Species:Drosophila melanogaster
Sequence 2:XP_073781010.1 Gene:cadm4 / 492787 ZFINID:ZDB-GENE-041114-138 Length:425 Species:Danio rerio


Alignment Length:304 Identity:87/304 - (28%)
Similarity:125/304 - (41%) Gaps:55/304 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 GELLQ--NVTVPVSREAVLQCVVDNLQTYKIAWLRVDTQTILTIQN----------HVITKNHRM 185
            |:.:|  ||||.....|.:.|   .||.|        ..:|:.|||          ....|:.|.
Zfish    40 GQAVQAENVTVLEGGTAQISC---RLQNY--------DGSIVVIQNPRRQTLFFNGTRALKDDRF 93

  Fly   186 SITHAEKRAWILRIRDVKESDKGWYMCQINTDPMKSQVGYLDVVVPPDILDYPTSTDMVIREGSN 250
            .:.....:...:.:.:|..||:|.|.||:.||....||..|.|||||::......|:.|  ||..
Zfish    94 QMVLFTPKLVRITLTNVSVSDEGGYFCQLYTDDTHHQVATLSVVVPPEVPSVEVKTEAV--EGGE 156

  Fly   251 VTLKCAATGS-PTPTITWRREGGELIPLPNGAEAVAYNGSFLTIAKVNRL------NMGAYLCIA 308
            |.|.|.:..| |..|:.|.|:..| ||   |..:...||..::::...|:      |..|..|.|
Zfish   157 VELTCLSLRSKPPATLRWVRDRRE-IP---GVISQQENGKTVSVSNTIRIPVERKDNRAALSCEA 217

  Fly   309 SNGIPPTVS-KRV---MLIVHFPPMIWI--QNQLVGAALTQNITLECQSEAYPKSINYWMKNDTI 367
            |:  |..|| |||   .|.|||.|.:.|  ...::....:.::|........|:.|.:...|||:
Zfish   218 SH--PALVSQKRVRHYSLDVHFAPTVKIVPPQGILREGDSLSLTCSVTGNPLPRDIQWSRVNDTL 280

  Fly   368 IVPGERFVPETFESGYKITMRLTIYEVDIQDFGAYRCVAKNSLG 411
                    ||..|....|   |.:..:.....|.|.|.|.|:.|
Zfish   281 --------PERAEKTGNI---LHMSRLSQSHNGTYLCQAHNNYG 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-thetaNP_723103.1 IG_like 137..230 CDD:214653 29/104 (28%)
Ig strand B 147..151 CDD:409353 1/3 (33%)
Ig strand C 160..164 CDD:409353 0/3 (0%)
Ig strand E 195..199 CDD:409353 0/3 (0%)
Ig strand F 209..214 CDD:409353 2/4 (50%)
Ig strand G 221..224 CDD:409353 1/2 (50%)
Ig 232..324 CDD:472250 32/102 (31%)
Ig strand B 251..255 CDD:409275 2/3 (67%)
Ig strand C 264..268 CDD:409275 1/3 (33%)
Ig strand E 289..293 CDD:409275 0/3 (0%)
Ig strand F 303..308 CDD:409275 2/4 (50%)
Ig strand G 317..320 CDD:409275 2/3 (67%)
Ig_3 327..408 CDD:464046 17/82 (21%)
cadm4XP_073781010.1 None

Return to query results.
Submit another query.