DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-theta and Dscaml1

DIOPT Version :9

Sequence 1:NP_723103.1 Gene:DIP-theta / 33795 FlyBaseID:FBgn0051646 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_001101611.1 Gene:Dscaml1 / 315615 RGDID:1304887 Length:2111 Species:Rattus norvegicus


Alignment Length:658 Identity:134/658 - (20%)
Similarity:228/658 - (34%) Gaps:165/658 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 IKIFPLTADAATIAARRQRRRAAGK--LQRKREMPEISSRLIVATATAAVVSIICLSLALPG--- 62
            |.|..|:.:...|::.::....|.:  ..||.:..:..:.:::...|..:||.....:..||   
  Rat   419 ISIRGLSNETLLISSAQKSHSGAYQCFATRKAQTAQDFAIIVLEDGTPRIVSSFSEKVVNPGEQF 483

  Fly    63 ---CAAQES---------DDEGELHHLDQMHHQHQDFIIGESEEHDHIAHHLAEMQNKDELLEDI 115
               |||:.:         |||..:.  |..|..:| :.:.:.....|:  ::...|.:|   ..:
  Rat   484 SLMCAAKGAPPPTVTWALDDEPVVR--DGSHRTNQ-YTMSDGTTISHM--NVTGPQIRD---GGV 540

  Fly   116 REDTVVNAIPEKDL--------PKFGELLQNVTVPVSREAVLQCVVDNLQTYKIAWLRVDTQTIL 172
            ...|..|::...:.        |.....::|:|....|:.::.|.|.....|.|.|.:   ..:|
  Rat   541 YRCTARNSVGSAEYQARINVRGPPSIRAMRNITAVAGRDTLINCRVIGYPYYSIKWYK---DALL 602

  Fly   173 TIQNH--VITKNHRMSITHAEKRAWILRIRDVKESDKGWYMCQINTDPMK--SQVGYLDVVVPPD 233
            ...||  |:.:|..:.:|..:           |..|:|.|:|.:...|..  ||..::.|.|||.
  Rat   603 LPDNHRQVVFENGTLKLTDVQ-----------KGMDEGEYLCSVLIQPQLSISQSVHVAVKVPPL 656

  Fly   234 I--LDYP--------------TSTDMVIR-----------EGSNVT------------------- 252
            |  .::|              :|.||.||           .||.||                   
  Rat   657 IQPFEFPPASIGQLLYIPCVVSSGDMPIRITWRKDGQVIISGSGVTIESKEFMSSLQISSVSLKH 721

  Fly   253 ---------------------------------------------LKCAATGSPTPTITWRREGG 272
                                                         |.|:..|.|.|.:.|:...|
  Rat   722 NGNYTCIASNAAATVSRERQLIVRVPPRFVVQPNNQDGIYGKAGVLNCSVDGYPPPKVMWKHAKG 786

  Fly   273 -----ELIPLP-NGAEAVAYNGSFLTIAKVNRLNMGAYLCIASNGIPPTVSKRVMLIVHFPPMIW 331
                 :..|:| .|...:..|.|.| |..|...::|.|||.||||:...:||.:.|.|..|.||.
  Rat   787 SGNPQQYHPVPLTGRIQILPNSSLL-IRHVLEEDIGYYLCQASNGVGTDISKAMFLTVKIPAMIT 850

  Fly   332 IQNQLVGAALTQNITLECQSEAYPKSINYWMKNDTIIVPGE--RFVPETFESGYKITMRLTIYEV 394
            .......|.......|.|.:......|..|.|.||:|.|..  |:...|.::|.::...|.:...
  Rat   851 SHPNTTIAIKGHAKELNCTARGERPIIIRWEKGDTVIDPDRVMRYAIATKDNGDEVVSTLKLKPA 915

  Fly   395 DIQDFGAYRCVAKNSLGDTDGAIKLYHIPQTTTMTTMAPTVSINTVPVVLVKYNKEQRYGSSQNS 459
            |..|...:.|.|.||.|:..|.|:|     |.......|.:.|..|....:.....||:..  ||
  Rat   916 DRGDSVFFSCHAINSYGEDRGLIQL-----TVQEPPDPPELEIREVKARSMNLRWTQRFDG--NS 973

  Fly   460 NTNPYNFNPGNSQQNTKLQRGKSNSKGS-------DQSPSGLNNVFVGATSSLWNSQDHHSSSSS 517
            ....::....|...:...::...|...:       |..|:.:.::.:.:.:.:..|:.....:.|
  Rat   974 IITGFDIEYKNKSDSWDFKQSTRNISPTINQANIVDLHPASVYSIRMYSFNKIGRSEPSKELTIS 1038

  Fly   518 SSSASSRG 525
            :..|:..|
  Rat  1039 TEEAAPDG 1046

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-thetaNP_723103.1 Ig 137..230 CDD:299845 23/96 (24%)
IG_like 137..230 CDD:214653 23/96 (24%)
IG_like 240..324 CDD:214653 35/164 (21%)
IGc2 247..310 CDD:197706 24/132 (18%)
Ig 327..419 CDD:299845 26/93 (28%)
IG_like 343..420 CDD:214653 22/78 (28%)
Dscaml1NP_001101611.1 IG 101..173 CDD:214652
IGc2 101..168 CDD:197706
Ig 183..276 CDD:299845
IG_like 195..276 CDD:214653
I-set 291..369 CDD:254352
IGc2 298..359 CDD:197706
IGc2 386..447 CDD:197706 5/27 (19%)
I-set 466..560 CDD:254352 18/101 (18%)
Ig 466..556 CDD:299845 18/97 (19%)
IGc2 577..635 CDD:197706 17/71 (24%)
IG_like 665..744 CDD:214653 9/78 (12%)
Ig 673..739 CDD:143165 9/65 (14%)
I-set 748..843 CDD:254352 26/95 (27%)
Ig7_DSCAM 765..843 CDD:143211 26/78 (33%)
I-set 849..942 CDD:254352 25/97 (26%)
Ig 861..949 CDD:299845 24/92 (26%)
FN3 945..1039 CDD:238020 12/95 (13%)
FN3 1046..1143 CDD:238020 1/1 (100%)
fn3 1151..1237 CDD:278470
FN3 1249..1340 CDD:238020
IGc2 1364..1428 CDD:197706
FN3 1442..1532 CDD:238020
FN3 1546..1618 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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