DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-theta and rig-4

DIOPT Version :9

Sequence 1:NP_723103.1 Gene:DIP-theta / 33795 FlyBaseID:FBgn0051646 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:563 Identity:117/563 - (20%)
Similarity:187/563 - (33%) Gaps:187/563 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 KDLPKFGELLQNVTVPVSREAVLQCVVDNLQTYKIAWLRVDTQTILTIQNHVITKNHRMSITHAE 191
            ||||  .|:.:.|...:|    |:|.|....:..|.|.                ||..|..|...
 Worm   327 KDLP--NEIQKTVGSSLS----LKCSVKKKSSMDIKWY----------------KNGLMMTTQRG 369

  Fly   192 KRAWILRIRDVKESDKGWYMC--------------------------QINTDPMKSQVGYLDVVV 230
            |    |.|..:|:.|.|.|.|                          :::.|.|..:........
 Worm   370 K----LTIDRIKQDDFGLYQCEATNAAGADLASVWVKEGEANETVATEMSEDGMSLEEEISMETP 430

  Fly   231 PPDILDY------------------------PTSTDMVIREGSN-VTLKCAATGSPTPTITWRRE 270
            ||..|.:                        .|..|:.:..|:: :.::|||||||.|.|.|...
 Worm   431 PPRKLKFFDNSKSQEQLFPFTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGSPPPNIIWLLN 495

  Fly   271 GGELIPLPNGAEAVAYN--GSFLTIAKVNRLNMGAYLC-IASNGIPPTVSKRV---MLIVHFPPM 329
            |.|:     ..:.|.|:  ...|.|..:.:.:.|.|.| |:.:.:..|.:.:|   .||.:.|. 
 Worm   496 GHEI-----QTDNVKYDLTNDGLAIHDIRKSDEGEYTCEISGSNVKATANVQVNGDSLIEYGPA- 554

  Fly   330 IWIQNQLVGAALTQNITLECQ--SEAYPKSINYWMKNDTIIVPGERFVPETFESGYKITMR---- 388
              .|..|:|.    |:...|:  .|...|:...|..||.::       |....||.:|:..    
 Worm   555 --DQKSLIGT----NVEFSCEVAKEYVRKASVEWYLNDVLL-------PVNGNSGLRISRNRKGS 606

  Fly   389 LTIYEVDIQDFGAYRC-----------------VAKNSLGDT----------------------D 414
            |.|.:|...:.|.|||                 :.|.::.:.                      |
 Worm   607 LIIRQVGPDNTGEYRCRVTVDGREENASAMLQIIEKPAMPERVRAELHNETMPAKVRVRWNEGFD 671

  Fly   415 GAIKLYHIPQTTTMTTMAP-------TVSINTVPVVLVKYNKEQRYGSSQNSNTNPYNFNPGNSQ 472
            |...:  |.....|.||.|       |.:|:.:|       ||:   ......|:..:..| :|.
 Worm   672 GNEPI--IKHAIEMRTMGPTGLWSDWTTAIDNIP-------KEE---GKPCCWTDIEDLRP-SST 723

  Fly   473 QNTKLQRGKSNSKGSDQSPSGLNNVFVGATSSLWNSQDHHSSSSSSSSASSRGRDHHQQQHHQQQ 537
            ...::.....:..|....||          .|:...|...|::..:.:||:|.......|..|.:
 Worm   724 AEFRVVASNKHGPGKPSLPS----------YSVTMPQQPPSAAPRNVAASARSPHSVMVQWQQPK 778

  Fly   538 QQNHGSD---HGASYRSDGKS------PHLTNHDAK-SLTDDL 570
            ::....|   :...||..|.|      .:||..||: :|.|:|
 Worm   779 EELDSGDVLGYVVRYRLAGYSSLTWNEKNLTTKDARNTLVDEL 821

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-thetaNP_723103.1 Ig 137..230 CDD:299845 21/118 (18%)
IG_like 137..230 CDD:214653 21/118 (18%)
IG_like 240..324 CDD:214653 25/90 (28%)
IGc2 247..310 CDD:197706 21/66 (32%)
Ig 327..419 CDD:299845 25/136 (18%)
IG_like 343..420 CDD:214653 21/121 (17%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 21/97 (22%)
IGc2 338..393 CDD:197706 18/78 (23%)
I-set 459..543 CDD:254352 24/88 (27%)
IGc2 478..534 CDD:197706 20/60 (33%)
IG_like 553..639 CDD:214653 22/99 (22%)
Ig 564..635 CDD:143165 17/77 (22%)
FN3 643..747 CDD:238020 19/126 (15%)
FN3 756..850 CDD:238020 17/66 (26%)
FN3 858..954 CDD:238020
FN3 959..1042 CDD:238020
FN3 1057..1151 CDD:238020
FN3 1156..1251 CDD:238020
FN3 1258..1356 CDD:238020
FN3 1361..1453 CDD:238020
FN3 1464..1560 CDD:238020
FN3 1572..1664 CDD:238020
FN3 1679..1764 CDD:238020
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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