DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-eta and lrig2

DIOPT Version :9

Sequence 1:NP_001188701.2 Gene:DIP-eta / 33793 FlyBaseID:FBgn0031725 Length:450 Species:Drosophila melanogaster
Sequence 2:XP_021332954.1 Gene:lrig2 / 571101 ZFINID:ZDB-GENE-041111-75 Length:1044 Species:Danio rerio


Alignment Length:363 Identity:91/363 - (25%)
Similarity:141/363 - (38%) Gaps:46/363 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SNFCQCRKQTCALSVILLLILMSQQC-----YPQRVEVPAEVIVDPK------FSSPIV-----N 51
            |..|.|:.|.  |...|:.....|.|     :|..:...:.:.|.|:      |..|.:     .
Zfish   402 SLLCDCQLQW--LGQWLINSRFQQSCTAVCAHPASLAGSSVLAVKPEEFVCSDFPKPQITAHPKT 464

  Fly    52 MTAPVGRDAFLTCVV--QDLGPYKVAWLRVDTQTI--LTIQNHVITKNQRIGIANSEHKTWTMRI 112
            ..|..|.:..|.|..  ....|...|| |.|.:.:  ..:||:...::||:      ..|..:.:
Zfish   465 AVALRGTNVTLNCSAFSSSDSPMSTAW-RKDGEVLYEAQVQNYARYQDQRL------LYTTILHL 522

  Fly   113 KDIKESDKGWYMCQINT--DPMKSQMGYLDVVVPPDILDYPTSTDMVVREGSNVTLKCAATGSPE 175
            .::..:|:|.|.|.::.  ....|.:..|.|...|..|..|  .|:.:|.|:...|:|||.|.|.
Zfish   523 LNVNFTDEGQYQCVLSNHFGSNYSTLAKLTVNELPTFLKTP--MDLTIRTGTVARLECAAEGHPT 585

  Fly   176 PTITWRRESGVPIELATGEEVMSIEGTD--LVIPNVRRHHMGAYLCIASNGVPPSVSKRITLVVH 238
            |.|.|:::.|:... |..|..|.:...|  ..|.||:...||.|.|.|.|.. .|:|...||.|.
Zfish   586 PQIAWQKDGGINFP-AARERRMHVMPDDDTFFIANVKAEDMGVYSCTAKNEA-GSLSANATLTVL 648

  Fly   239 FPPMITVQNQLIGAVEGKGVTLDCESEAYPKSINYWTRERGEIVPPGGKYSANVTEIGGYRNSMR 303
            ..|......:......|:...|.|.:...|.....||::...:|.....:.|...::        
Zfish   649 ETPSFQRPLEDRNVARGETAVLQCIARGSPAPRLNWTKDDAPLVLTERHFFAAANQL-------- 705

  Fly   304 LHINPLTQAEFGSYRCVAKNSLGDTDGTIKLYRIPPNA 341
            |.|.....|:.|.|.|:..|:||...|.|.| .:.|:|
Zfish   706 LIIVDAGPADAGKYTCIMSNTLGTERGHIYL-SVSPSA 742

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
DIP-etaNP_001188701.2 Ig 51..141 CDD:299845 20/95 (21%)
IG_like 51..137 CDD:214653 19/91 (21%)
IG_like 153..237 CDD:214653 30/85 (35%)
Ig 161..224 CDD:299845 23/64 (36%)
IG_like 252..335 CDD:214653 19/82 (23%)
Ig 258..333 CDD:143165 17/74 (23%)
lrig2XP_021332954.1 NEL <7..>191 CDD:330839
leucine-rich repeat 38..57 CDD:275380
leucine-rich repeat 58..81 CDD:275380
leucine-rich repeat 83..104 CDD:275380