DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-eta and dscama

DIOPT Version :9

Sequence 1:NP_001188701.2 Gene:DIP-eta / 33793 FlyBaseID:FBgn0031725 Length:450 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:373 Identity:97/373 - (26%)
Similarity:156/373 - (41%) Gaps:56/373 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CQCRKQTCALSVILLLILMSQQCYPQRVEVPAEVIVDPKFSSPIVNMTAPVGRDAFLTCVVQDLG 70
            |.|......:|            |..|:.|.....:     .|:.|:||..|.|.::.|.|....
Zfish   485 CTCNNSAGTVS------------YQARINVRGSADI-----RPMKNLTAIAGWDMYIHCHVIGYP 532

  Fly    71 PYKVAWLRVDTQTILTIQNHVITKNQRIGIANSEHKTWTMRIKDI-KESDKGWYMCQINTDP--M 132
            .|.:.|.:         .::::..|.|   ..:.....|:::.:: ||.|:|.|.|.:...|  .
Zfish   533 YYSIKWFK---------NSNLLPFNDR---QRAFENNGTLKLLNVQKELDEGEYSCHVQVQPQLF 585

  Fly   133 KSQMGYLDVVVPPDI--LDYPTSTDMVVREGSNVTLKCAATGSPEP-TITWRRESGVPIELATGE 194
            |:|..::.|.|||.|  .::|..:     .|..|.:.|.......| :|||.:: |..|..:.|.
Zfish   586 KNQSVHVTVKVPPFIQPFEFPRYS-----IGHRVFVPCVVRSGDLPISITWEKD-GKSINASLGV 644

  Fly   195 EVMSIEGT-DLVIPNVRRHHMGAYLCIASNGVPPSVSKRITLVVHFPPMITVQNQLIGAVEGKGV 258
            .:.:|:.| .|.|.|::|.|.|.|.|||.|.. ..|..:..|:|..||...||.|....:.||.|
Zfish   645 TIDNIDFTSSLRISNLQRVHNGTYTCIAQNDA-AVVKYQSQLIVRVPPRFKVQPQDQDGIYGKSV 708

  Fly   259 TLDCESEAYPKSINYWTRERGEIVPPGGKYSANVTEIGGYRNSM----RLHINPLTQAEFGSYRC 319
            .|:|.::..|:....|...:|..||.....:.|    .|:|..:    .|.|..:.:.:.|.|.|
Zfish   709 ILNCSADGEPRPTIEWKYSKGAGVPQFQPIALN----SGFRVQLLGNGSLLIKHVLEEDAGYYLC 769

  Fly   320 VAKNSLGDTDGTIKLY---RIPPNAVNYVENFEARHKGKKRTKSSESH 364
            ...|.:| .|.:..:|   :||....:|..|..|. ||:|...|.::|
Zfish   770 KVSNDVG-ADVSKSMYLNVKIPAMITSYPNNSLAT-KGEKIEMSCKAH 815

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-etaNP_001188701.2 Ig 51..141 CDD:299845 21/92 (23%)
IG_like 51..137 CDD:214653 21/88 (24%)
IG_like 153..237 CDD:214653 25/85 (29%)
Ig 161..224 CDD:299845 22/64 (34%)
IG_like 252..335 CDD:214653 21/86 (24%)
Ig 258..333 CDD:143165 19/78 (24%)
dscamaXP_021334866.1 Ig 124..217 CDD:325142
I-set 236..311 CDD:254352
IG_like 321..402 CDD:214653
I-set 408..502 CDD:333254 5/28 (18%)
IGc2 524..579 CDD:197706 13/66 (20%)
Ig 614..679 CDD:319273 22/66 (33%)
Ig_DSCAM 708..787 CDD:143211 20/83 (24%)
Ig 805..898 CDD:325142 4/11 (36%)
FN3 894..988 CDD:238020
FN3 995..1092 CDD:238020
fn3 1100..1186 CDD:306538
fn3 1199..1282 CDD:306538
Ig 1312..1377 CDD:319273
fn3 1405..1471 CDD:306538
FN3 1492..1563 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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