DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-eta and Dscam3

DIOPT Version :9

Sequence 1:NP_001188701.2 Gene:DIP-eta / 33793 FlyBaseID:FBgn0031725 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster


Alignment Length:460 Identity:100/460 - (21%)
Similarity:189/460 - (41%) Gaps:82/460 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 RVEVPAEVIVDP-KFSSPIVNMTAPVGRDAFLTCVVQ--DLGPYKVAWLRVDTQTILTIQNHVIT 93
            ::.|.:..:::| ||...:..     |..|.:||.|.  |: |...:|.:.|:....::|     
  Fly   627 QLNVNSPPVIEPFKFPKNLQE-----GGRAQITCAVSSGDM-PIYFSWKKDDSSIPSSLQ----- 680

  Fly    94 KNQRIGIANSEHKTWTMRI-KDIKESDKGWYMCQINTDPMK-SQMGYLDVVVPPDILDYPTSTDM 156
                  |...:.:.:::.: |||.....|.|.|..:....| :....|.|.|.|.....|..|.:
  Fly   681 ------ITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTAI 739

  Fly   157 VVREGSNVTLKCAATGSPEPTITWRRESGVPIELATGEEVMSIEGTDLVIPNVRRHHMGAYLCIA 221
            ::  |:.:::.|.|.|.|.|||||.:..|   :.:...:.:|:....|::.....:..|.|:|.|
  Fly   740 ML--GNTISINCEAEGYPIPTITWFKGQG---KGSKDFKPLSMRNHSLLLNLATDNDEGYYMCQA 799

  Fly   222 SNGVPPSVSKRITLVVHFPPMITVQNQLIGAVEGKGVTLDCESEA-YPKSINYWTRERGEIVPPG 285
            :|.:...:.|.|.:.|:.|.......:.|.:.....|||||.::. .|.:|. ||:..|.|    
  Fly   800 TNEIGAGLKKTIRINVNEPARFEQSARNISSRRNDPVTLDCHAKGDEPITIG-WTQNNGRI---- 859

  Fly   286 GKYSANVTEIGGYRNSM-----------RLHINPLTQAEFGSYRCVAKNSLGDTDGTIKL-YRIP 338
                    ::..:|.|:           :|.|....:.:.|.|||:|:|..|..:..|.| .:..
  Fly   860 --------DLNNFRFSIAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAENPYGRAEQIIFLAVQER 916

  Fly   339 PNAVNYVENFEARHKGKKRTKSS-----ESHHPARA---QEHSGEDMENPGKRKA---------- 385
            |:..:::|.||.   |.:..|.|     :.:.|..:   |..:.:.:::.|...|          
  Fly   917 PDTPSHLEIFEV---GSRTVKLSWRRPFDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVI 978

  Fly   386 DLSLGAESIDSIYGNSAAGSRRRQDLGGV-----LLLLLPVAVAVAMSLATAGVMRETQMTLPPQ 445
            ::||.:.||...|.:..   |....:.|:     .|:.:.....:..|..|..::.:||...|.:
  Fly   979 NVSLPSTSISRSYDSDL---RESAIVAGLTPATTFLIRMQAINEIERSAYTEAIVLKTQEEAPTE 1040

  Fly   446 TLTHV 450
            ..::|
  Fly  1041 APSNV 1045

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-etaNP_001188701.2 Ig 51..141 CDD:299845 19/93 (20%)
IG_like 51..137 CDD:214653 18/89 (20%)
IG_like 153..237 CDD:214653 21/83 (25%)
Ig 161..224 CDD:299845 17/62 (27%)
IG_like 252..335 CDD:214653 24/95 (25%)
Ig 258..333 CDD:143165 22/86 (26%)
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352
Ig 264..334 CDD:143165
I-set 345..433 CDD:254352
Ig 358..431 CDD:143165
Ig 456..533 CDD:143165
IGc2 553..619 CDD:197706
I-set 634..724 CDD:254352 22/106 (21%)
ig 645..712 CDD:278476 17/83 (20%)
IG_like 734..815 CDD:214653 22/85 (26%)
Ig 745..815 CDD:299845 19/72 (26%)
I-set 820..913 CDD:254352 25/105 (24%)
Ig 838..920 CDD:299845 23/94 (24%)
FN3 917..1033 CDD:238020 21/121 (17%)
FN3 1040..1142 CDD:238020 1/6 (17%)
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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