DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-eta and dscamb

DIOPT Version :9

Sequence 1:NP_001188701.2 Gene:DIP-eta / 33793 FlyBaseID:FBgn0031725 Length:450 Species:Drosophila melanogaster
Sequence 2:XP_009289749.1 Gene:dscamb / 386937 ZFINID:ZDB-GENE-031118-67 Length:2020 Species:Danio rerio


Alignment Length:430 Identity:97/430 - (22%)
Similarity:151/430 - (35%) Gaps:133/430 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CQCRKQTCALSVILLLILMSQQCYPQRVEV--PAEVIVDPKFSSPIVNMTAPVGRDAFLTCVVQD 68
            |.|.....::|            |..|:.|  ||.:       .|:.|:||..|||.::.|.:..
Zfish   484 CTCNNSAGSVS------------YQARINVRGPASI-------RPMKNVTAIAGRDTYIHCRIIG 529

  Fly    69 LGPYKVAWLRVDTQTILTIQNHVITKNQRIGIANSEHKTWTMRIKDIKESDKGWYMCQINTDPMK 133
            ...|.:.|.:         .::::..|.|   ..:.....|:::.:::.||:|.|.|.:..||.|
Zfish   530 YPYYSIKWYK---------DSNLLPFNHR---QRAFENNGTLKLSNVQNSDEGEYTCYVLVDPEK 582

  Fly   134 S--QMGYLDVVVPP------------------------------------------------DIL 148
            .  :..::.|.|||                                                |.:
Zfish   583 QIHRSVHVTVKVPPLIQHSDSQSASIGQRVFIPCVVISGDLPMSITWHKDGRPINASLGVTIDNI 647

  Fly   149 DYPT----------------------------STDMVVR---------------EGSNVTLKCAA 170
            |:.:                            |..::|:               .|.:|||.|:|
Zfish   648 DFTSSLRISNLSEIHNGSYTCIARNEAAAVEHSIQLIVKVPPHFEVQPKDQDGIYGKSVTLNCSA 712

  Fly   171 TGSPEPTITWRRESGV------PIELATGEEVMSIEGTDLVIPNVRRHHMGAYLCIASNGVPPSV 229
            .|:|.|||.|....|.      ||.|.:|..|..:|...|:|.:|.....|.|||..||.|...:
Zfish   713 KGNPIPTIVWNHSKGAGVPQFQPIALNSGSRVQLLENGSLLIKHVLEEDAGFYLCKVSNDVGADI 777

  Fly   230 SKRITLVVHFPPMITVQNQLIGAVEGKGVTLDCESEAYPKSINYWTRERGEIVPPGGKYSANVTE 294
            ||.:.|.|..|.|||.......|.:|....:.|.:.........|.:|...|.|...:|...|.|
Zfish   778 SKSMYLTVKIPAMITSYPNTTRAEQGHMTEMSCTAHGEKPIKVRWEKESHIINPDMSRYVVTVKE 842

  Fly   295 IGGYRNSMRLHINPLTQAEFGSYRCVAKNSLGDTDGTIKL 334
            :|....| .|.|....:.:.|.:.|:|.||.|:..|.|:|
Zfish   843 VGDEVIS-TLQILHTVREDSGFFSCIAINSYGEDKGIIQL 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-etaNP_001188701.2 Ig 51..141 CDD:299845 20/91 (22%)
IG_like 51..137 CDD:214653 20/87 (23%)
IG_like 153..237 CDD:214653 34/104 (33%)
Ig 161..224 CDD:299845 27/68 (40%)
IG_like 252..335 CDD:214653 23/83 (28%)
Ig 258..333 CDD:143165 19/74 (26%)
dscambXP_009289749.1 I-set 132..198 CDD:254352
I-set 225..310 CDD:254352
IGc2 239..300 CDD:197706
IG_like 320..400 CDD:214653
IGc2 328..391 CDD:197706
IG_like 417..501 CDD:214653 5/28 (18%)
Ig 424..498 CDD:143165 4/25 (16%)
IG_like 511..592 CDD:214653 20/92 (22%)
IGc2 518..576 CDD:197706 14/69 (20%)
I-set 595..685 CDD:254352 5/89 (6%)
Ig 612..682 CDD:143165 3/69 (4%)
I-set 689..785 CDD:254352 32/95 (34%)
Ig7_DSCAM 706..785 CDD:143211 31/78 (40%)
IG_like 795..883 CDD:214653 23/88 (26%)
Ig 803..890 CDD:299845 22/80 (28%)
FN3 887..980 CDD:238020
FN3 987..1084 CDD:238020
FN3 1092..1185 CDD:238020
FN3 1190..1279 CDD:238020
IGc2 1302..1367 CDD:197706
FN3 1398..1471 CDD:238020
FN3 1485..1557 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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