DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-eta and Lsamp

DIOPT Version :10

Sequence 1:NP_608946.3 Gene:DIP-eta / 33793 FlyBaseID:FBgn0031725 Length:450 Species:Drosophila melanogaster
Sequence 2:XP_030104997.1 Gene:Lsamp / 268890 MGIID:1261760 Length:392 Species:Mus musculus


Alignment Length:387 Identity:116/387 - (29%)
Similarity:167/387 - (43%) Gaps:86/387 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LILMSQQCYPQRVEVPAEVIVDP-------------------------KFSSPIVNMTAPVGRDA 60
            |.|.|.|......:.||||.:.|                         .|:....|:|...|..|
Mouse    16 LSLFSLQVLAFWNQPPAEVNLSPITIPGTEETMRKKAKEEEGLPVRSVDFNRGTDNITVRQGDTA 80

  Fly    61 FLTCVVQDLGPYKVAWLRVDTQTILTIQNHVITKNQRIGIANSEHKTW----------------T 109
            .|.|||:|... |||||                  .|.||..:.|..|                :
Mouse    81 ILRCVVEDKNS-KVAWL------------------NRSGIIFAGHDKWSLDPRVELEKRHALEYS 126

  Fly   110 MRIKDIKESDKGWYMCQINT--DPMKSQMGYLDVVVPPDILDYPTSTDMVVREGSNVTLKCAATG 172
            :||:.:...|:|.|.|.:.|  :|..||: ||.|.|||.|.:  .|:|:.|.|||||||.|.|.|
Mouse   127 LRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMANG 188

  Fly   173 SPEPTITWRRESGVPIELATGEEVMSIEGTDLVIPNVRRHHMGAYLCIASNGVPPSVSKRITLVV 237
            .|||.||||..:.:..|....||.:.|.|       :.|...|.|.|.|:|.|..:..|::.:.|
Mouse   189 RPEPVITWRHLTPLGREFEGEEEYLEILG-------ITREQSGKYECKAANEVSSADVKQVKVTV 246

  Fly   238 HFPPMITVQNQLIGAVEGKGVTLDCESEAYPKSINYWTRERGEIVPPGGKYSANVTEIGGYRNSM 302
            ::||.|| :::...|..|:..:|.||:.|.|.....|.|:...|      .|||..||.......
Mouse   247 NYPPTIT-ESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRI------NSANGLEIKSTEGQS 304

  Fly   303 RLHINPLTQAEFGSYRCVAKNSLGDTDGTIKLY-RIPPNAVNYVE------NFEARHKGKKR 357
            .|.:..:|:..:|:|.|||.|.||.|:.::.|: |:.|...:.::      :|:.:..|..|
Mouse   305 SLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFKRVLPTVPHPIQEIGTTVHFKPKGPGSVR 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-etaNP_608946.3 IG_like 51..137 CDD:214653 29/103 (28%)
Ig strand B 60..64 CDD:409353 2/3 (67%)
Ig strand C 73..77 CDD:409353 3/3 (100%)
Ig strand E 108..112 CDD:409353 1/19 (5%)
Ig strand F 122..127 CDD:409353 2/4 (50%)
Ig strand G 134..137 CDD:409353 2/2 (100%)
IgI_1_MuSK 145..237 CDD:409562 35/91 (38%)
Ig strand A 145..148 CDD:409562 1/2 (50%)
Ig strand A' 153..158 CDD:409562 2/4 (50%)
Ig strand B 164..171 CDD:409562 4/6 (67%)
Ig strand C 177..182 CDD:409562 3/4 (75%)
Ig strand C' 184..186 CDD:409562 0/1 (0%)
Ig strand D 194..197 CDD:409562 2/2 (100%)
Ig strand E 202..208 CDD:409562 0/5 (0%)
Ig strand F 215..222 CDD:409562 3/6 (50%)
Ig strand G 229..237 CDD:409562 1/7 (14%)
IG_like 252..335 CDD:214653 26/82 (32%)
Ig strand B 258..262 CDD:409353 1/3 (33%)
Ig strand C 271..282 CDD:409353 2/10 (20%)
Ig strand E 301..306 CDD:409353 1/4 (25%)
Ig strand F 316..321 CDD:409353 2/4 (50%)
Ig strand G 329..332 CDD:409353 0/2 (0%)
LsampXP_030104997.1 Ig 69..159 CDD:472250 31/109 (28%)
Ig strand B 80..84 CDD:409353 2/3 (67%)
Ig strand C 92..96 CDD:409353 3/3 (100%)
Ig strand E 125..129 CDD:409353 0/3 (0%)
Ig strand F 139..144 CDD:409353 2/4 (50%)
Ig strand G 152..155 CDD:409353 1/2 (50%)
Ig_3 162..232 CDD:464046 33/78 (42%)
Ig_3 249..325 CDD:464046 26/82 (32%)

Return to query results.
Submit another query.