DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-eta and rig-4

DIOPT Version :9

Sequence 1:NP_001188701.2 Gene:DIP-eta / 33793 FlyBaseID:FBgn0031725 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:344 Identity:70/344 - (20%)
Similarity:119/344 - (34%) Gaps:113/344 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 SSPIV-----NMTAPVGRDAFLTCVVQDLGPYKVAWLRVDTQTILTIQNHVITKNQRIGIANSEH 105
            |.||:     .:...||....|.|.|:......:.|.:          |.::...||        
 Worm   322 SRPILKDLPNEIQKTVGSSLSLKCSVKKKSSMDIKWYK----------NGLMMTTQR-------- 368

  Fly   106 KTWTMRIKDIKESDKGWYMCQ----------------------INTDPMKSQMGYLDVV----VP 144
              ..:.|..||:.|.|.|.|:                      :.|:..:..|...:.:    .|
 Worm   369 --GKLTIDRIKQDDFGLYQCEATNAAGADLASVWVKEGEANETVATEMSEDGMSLEEEISMETPP 431

  Fly   145 PDILDY------------------------PTSTDMVVREGSN-VTLKCAATGSPEPTITWRRES 184
            |..|.:                        .|..|:.|..|:: :.::|||||||.|.|.|    
 Worm   432 PRKLKFFDNSKSQEQLFPFTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGSPPPNIIW---- 492

  Fly   185 GVPIELATGEEVMS------IEGTDLVIPNVRRHHMGAYLC-IASNGVPPSVSKRI---TLVVHF 239
                 |..|.|:.:      :....|.|.::|:...|.|.| |:.:.|..:.:.::   :|:.:.
 Worm   493 -----LLNGHEIQTDNVKYDLTNDGLAIHDIRKSDEGEYTCEISGSNVKATANVQVNGDSLIEYG 552

  Fly   240 PPMITVQNQLIGAVEGKGVTLDCE-SEAYPK--SINYWTRERGEIVPPGGKYSANVTEIGGYRNS 301
            |   ..|..|||.    .|...|| ::.|.:  |:.::..:  .::|..|.....::     ||.
 Worm   553 P---ADQKSLIGT----NVEFSCEVAKEYVRKASVEWYLND--VLLPVNGNSGLRIS-----RNR 603

  Fly   302 M-RLHINPLTQAEFGSYRC 319
            . .|.|..:.....|.|||
 Worm   604 KGSLIIRQVGPDNTGEYRC 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-etaNP_001188701.2 Ig 51..141 CDD:299845 18/111 (16%)
IG_like 51..137 CDD:214653 17/107 (16%)
IG_like 153..237 CDD:214653 25/94 (27%)
Ig 161..224 CDD:299845 21/70 (30%)
IG_like 252..335 CDD:214653 15/72 (21%)
Ig 258..333 CDD:143165 15/66 (23%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 16/91 (18%)
IGc2 338..393 CDD:197706 15/74 (20%)
I-set 459..543 CDD:254352 25/92 (27%)
IGc2 478..534 CDD:197706 20/64 (31%)
IG_like 553..639 CDD:214653 20/84 (24%)
Ig 564..635 CDD:143165 15/66 (23%)
FN3 643..747 CDD:238020
FN3 756..850 CDD:238020
FN3 858..954 CDD:238020
FN3 959..1042 CDD:238020
FN3 1057..1151 CDD:238020
FN3 1156..1251 CDD:238020
FN3 1258..1356 CDD:238020
FN3 1361..1453 CDD:238020
FN3 1464..1560 CDD:238020
FN3 1572..1664 CDD:238020
FN3 1679..1764 CDD:238020
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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