DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-eta and lsamp

DIOPT Version :9

Sequence 1:NP_001188701.2 Gene:DIP-eta / 33793 FlyBaseID:FBgn0031725 Length:450 Species:Drosophila melanogaster
Sequence 2:XP_031751462.1 Gene:lsamp / 100124984 XenbaseID:XB-GENE-5759171 Length:368 Species:Xenopus tropicalis


Alignment Length:305 Identity:102/305 - (33%)
Similarity:147/305 - (48%) Gaps:29/305 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 FSSPIVNMTAPVGRDAFLTCVVQDLGPYKVAWLRVDTQTILTIQNHVITKNQRIGIANSEHKTWT 109
            |:....|:|...|..|.|.|.|:|... :||||  :...|:...:...:.:.|:.:.......::
 Frog    34 FNRSTDNITVRQGDTAILRCFVEDRSS-RVAWL--NRSGIIFAGDDKWSLDPRVELEKRSLLEYS 95

  Fly   110 MRIKDIKESDKGWYMCQINT-DPMKSQMGYLDVVVPPDILDYPTSTDMVVREGSNVTLKCAATGS 173
            :||:.:..||:|.|.|.:.| ...|:...||.|.|||.|.:  .|.|:.|.|||||||.|.|.|.
 Frog    96 LRIQKVDVSDEGPYTCSVQTKQHTKTTQVYLIVQVPPKISN--ISADITVNEGSNVTLMCIAYGR 158

  Fly   174 PEPTITWRR---ESGV-PIELATGEEVMSIEGTDLVIPNVRRHHMGAYLCIASNGVPPSVSKRIT 234
            |||.||||.   .:|. |.....|||..      |.|..:.|...|.|.|.|:|.|..:..|::.
 Frog   159 PEPMITWRHLTPTAGTSPARDFEGEEEF------LEIQGITREQSGRYECKAANEVASADVKQVR 217

  Fly   235 LVVHFPPMITVQNQLIGAVEGKGVTLDCESEAYPKSINYW----TRERGEIVPPGGKYSANVTEI 295
            :.|::||:|| :::...|..||...|.||:.|.|.....|    ||.|       ...||...||
 Frog   218 VTVNYPPIIT-ESKSNEATTGKQAILRCEASAVPAPDFEWYKDDTRSR-------RINSAQGLEI 274

  Fly   296 GGYRNSMRLHINPLTQAEFGSYRCVAKNSLGDTDGTIKLY-RIPP 339
            ....:...|.:..:|:..:|:|.|||.|.||.|:.::.|| |:.|
 Frog   275 RNTGSRSVLMVANVTEEHYGNYTCVAANKLGITNTSLYLYKRVSP 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-etaNP_001188701.2 Ig 51..141 CDD:299845 25/90 (28%)
IG_like 51..137 CDD:214653 23/86 (27%)
IG_like 153..237 CDD:214653 35/87 (40%)
Ig 161..224 CDD:299845 28/66 (42%)
IG_like 252..335 CDD:214653 27/86 (31%)
Ig 258..333 CDD:143165 24/78 (31%)
lsampXP_031751462.1 Ig 38..128 CDD:416386 25/92 (27%)
FR1 38..54 CDD:409353 5/15 (33%)
Ig strand A' 39..45 CDD:409353 2/5 (40%)
Ig strand B 47..55 CDD:409353 3/7 (43%)
CDR1 55..59 CDD:409353 2/3 (67%)
FR2 60..67 CDD:409353 4/9 (44%)
Ig strand C 60..66 CDD:409353 4/8 (50%)
CDR2 68..78 CDD:409353 1/9 (11%)
Ig strand C' 70..73 CDD:409353 1/2 (50%)
Ig strand C' 75..78 CDD:409353 0/2 (0%)
FR3 79..114 CDD:409353 8/34 (24%)
Ig strand D 83..90 CDD:409353 1/6 (17%)
Ig strand E 93..99 CDD:409353 1/5 (20%)
Ig strand F 106..114 CDD:409353 3/7 (43%)
CDR3 115..119 CDD:409353 1/3 (33%)
Ig strand G 119..128 CDD:409353 3/8 (38%)
FR4 121..128 CDD:409353 2/6 (33%)
Ig_3 131..206 CDD:404760 35/82 (43%)
Ig strand A' 138..143 CDD:409353 2/4 (50%)
Ig strand B 149..156 CDD:409353 4/6 (67%)
Ig strand C 162..167 CDD:409353 3/4 (75%)
Ig strand C' 173..175 CDD:409353 1/1 (100%)
Ig strand E 185..191 CDD:409353 2/11 (18%)
Ig strand F 198..205 CDD:409353 3/6 (50%)
Ig strand G 212..220 CDD:409353 1/7 (14%)
Ig_3 223..302 CDD:404760 27/86 (31%)
putative Ig strand A 224..230 CDD:409353 3/6 (50%)
Ig strand B 240..244 CDD:409353 1/3 (33%)
Ig strand C 253..257 CDD:409353 0/3 (0%)
Ig strand E 281..285 CDD:409353 1/3 (33%)
Ig strand F 295..300 CDD:409353 2/4 (50%)
Ig strand G 308..311 CDD:409353 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 58 1.000 Domainoid score I10578
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I4412
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 1 1.000 - - FOG0000150
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X97
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.060

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