DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIB and GLR3.3

DIOPT Version :9

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:NP_001322169.1 Gene:GLR3.3 / 840859 AraportID:AT1G42540 Length:933 Species:Arabidopsis thaliana


Alignment Length:1029 Identity:223/1029 - (21%)
Similarity:392/1029 - (38%) Gaps:281/1029 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 NEDTLVIKIGAIF-FDTEM-KLAD-AFSAALEEVNAINPALKLDAIKRYVTVDDS---------I 71
            :|...|:|||:|| ||:.: |:|. |...|:::||: ||.: |...|..|::.:|         .
plant    23 SEKPKVVKIGSIFSFDSVIGKVAKIAIDEAVKDVNS-NPDI-LSGTKFSVSMQNSNCSGFMGMVE 85

  Fly    72 VLQDISCDLIGSGVAAIFGPSSKTNSDIVEVLCNMTGIPHLQFDWHPQQSNRERMNHQLTVNV-A 135
            .|:.:..|::|     |.||.....:.::..:.|...:|.|.|              .:|..| :
plant    86 ALRFMEKDIVG-----IIGPQCSVVAHMISHMANELRVPLLSF--------------AVTDPVMS 131

  Fly   136 PMEL--FLSAAFSDI-----LAS--KTFDWKSFTIAYERS----SHLIRLQHILAWKQL---HKA 184
            |::.  |:....||:     :||  ..:.||.....:...    :.:..|...||.::|   :||
plant   132 PLQFPYFIRTTQSDLYQMDAIASIVDFYGWKEVIAVFVDDDFGRNGVAALNDKLASRRLRITYKA 196

  Fly   185 GIKMQEFERGDDYRILWKRINNAREKFVLLDCPSDILVDVINASIGYNMTGSFNHLFL------- 242
            |:.       .|..:....|.|...|.:||. |..:::.|. :.:|:.:.....:|.:       
plant   197 GLH-------PDTAVNKNEIMNMLIKIMLLQ-PRIVVIHVY-SELGFAVFKEAKYLGMMGNGYVW 252

  Fly   243 -------TNLDTH----------LSGI--------DGFYSRDF-----TVAVAAVRIRTYVPPPV 277
                   ||||:.          :.|:        |..:.|:|     .::.|::.:.||     
plant   253 IATDWLSTNLDSSSPLPAERLETIQGVLVLRPHTPDSDFKREFFKRWRKMSGASLALNTY----- 312

  Fly   278 HDEIDVFDNSVDTRFSSLGSQLVYDSIVLFYNALLEISQRPG-FYIPNFSCGRGFWQPGPRLVEQ 341
                               ....|||::|....|.:..:..| ....|.|......:.|...:|.
plant   313 -------------------GLYAYDSVMLLARGLDKFFKDGGNISFSNHSMLNTLGKSGNLNLEA 358

  Fly   342 M----------KQIT-PKMVKPPFKTQRLQINADGQREDFNLEVYNPIIDRVTHI--WNKEFQL- 392
            |          |.|. .:||.   .|.:||...|..|.....::.|.....|..|  |:....| 
plant   359 MTVFDGGEALLKDILGTRMVG---LTGQLQFTPDRSRTRPAYDIINVAGTGVRQIGYWSNHSGLS 420

  Fly   393 -----VDFEKLRENSTQALKQKRLQNKEDFSQKPIRYTVAT-----RVGKPY-FSWREEPEGVHY 446
                 :.:.|.:.|.:.:.|.|.:....:...||..:..:.     ::|.|. .|::|....:  
plant   421 TVLPELLYTKEKPNMSTSPKLKHVIWPGETFTKPRGWVFSNNGKELKIGVPLRVSYKEFVSQI-- 483

  Fly   447 EGNER-FEGYAVDLIYMLAQECKFDFNFEPVRDNKYGSYDAN-----------TDEWDGIIRQLI 499
            .|.|. |:|:.:|:.........:..   ||:...||:...|           |..:||::.   
plant   484 RGTENMFKGFCIDVFTAAVNLLPYAV---PVKFIPYGNGKENPSYTHMVEMITTGNFDGVVG--- 542

  Fly   500 DNNAQIGICDLTITQARRSVVDFTVPFMQLGISILS-YKEPPPKADIYAFLNPYNAEVWLFVMIA 563
                     |:.|...|..:||||.|:...|:.::: :|:  ..:..:|||.|:|..:|      
plant   543 ---------DVAIVTNRTKIVDFTQPYAASGLVVVAPFKK--LNSGAWAFLRPFNRLMW------ 590

  Fly   564 MMITAFALIFTGRIDQYEWDQPVENVNREMERQNIW---HLSN-------------ALWLVLGSM 612
             .:|....:|.|.:                    :|   |.:|             .||....:|
plant   591 -AVTGCCFLFVGIV--------------------VWILEHRTNDEFRGPPKRQCVTILWFSFSTM 634

  Fly   613 L-----NQGCDLLPRGLPMRLLTAFWWIFALLISQTYIAKLAAFIT----SSKIAGDIGSLHDLV 668
            .     |....|      .||:...|....|:|:.:|.|.|.:.:|    ||.|.| |.||.:..
plant   635 FFAHRENTVSTL------GRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPIKG-IESLRERD 692

  Fly   669 DQNKVQFGTIRGGATSVYFSESNDTDNRMAWNKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLM- 732
            |....|.|:.   |.|...:|.|.:::|:    :....|:|:.|..::|.     |||..|.:: 
plant   693 DPIGYQVGSF---AESYLRNELNISESRL----VPLGTPEAYAKALKDGP-----SKGGVAAIVD 745

  Fly   733 ETTNLQYYVQRNCELTQIGESFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFNSN 797
            |...::.::..||....:|:.|.:..:|.|.|.::....:||..||.|:|.|:|.::.:||...|
plant   746 ERPYVELFLSSNCAYRIVGQEFTKSGWGFAFPRDSPLAIDLSTAILELAENGDLQRIHDKWLMKN 810

  Fly   798 ESTCDSNVPTIDDGQFDMDSVGGLFVVLIVGVVVGLVIGVAEFLWHVQRISVKEKIPPMLALKAE 862
            ..|.::  ..::..:..:.|..|||  ||.||...|.:    ||:.||.|....|.|...|:..:
plant   811 ACTLEN--AELESDRLHLKSFWGLF--LICGVACLLAL----FLYFVQIIRQLYKKPTDDAIARD 867

  Fly   863 FYFVIRFWLTRKPLHTYRQSRDSTSTGYSSLEQITS----ASSAKKKKKTRRIE 912
                            .:|:.||:|...:.|::..|    ...:|.:.|.|:|:
plant   868 ----------------QQQNHDSSSMRSTRLQRFLSLMDEKEESKHESKKRKID 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 92/452 (20%)
ANF_receptor 41..378 CDD:279440 79/411 (19%)
PBP2_iGluR_Kainate 422..795 CDD:270432 94/417 (23%)
Lig_chan 555..822 CDD:278489 66/292 (23%)
GLR3.3NP_001322169.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.870

Return to query results.
Submit another query.