DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIB and grid2

DIOPT Version :10

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:911 Identity:208/911 - (22%)
Similarity:377/911 - (41%) Gaps:173/911 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VIKIGAIFFDTEMKLADAFSAALEEVNAINPALKLDAIKRYVT-VDDSIVLQDI--SCDLIGSGV 85
            :|.|||||.::..|..:.|..|:.::|..|..|:.:.|...|. ||.:...|.:  :|:|:..|:
Zfish    26 IIHIGAIFDESAKKDDEVFRMAVADLNLNNEILETEKITVSVEFVDGNNPFQAVQEACELMNRGI 90

  Fly    86 AAIFGPSSKTNSDIVEVLCNMTGIPHLQFDWHPQQSNR-------ERMNHQLTVNVAPMELFLSA 143
            .|:.......::..::.|.:...||||.....|..:.|       .......|:.|.| .::|:.
Zfish    91 LALVSSIGCMSAGSLQSLADAMHIPHLFIQRAPAGTPRSSCPPTTRAQPDDYTLFVRP-PVYLND 154

  Fly   144 AFSDILASKTFDWKSFTIAYERSSHLIRLQHILAWKQLHKAGIKMQEFERGDDYRILWKRINNAR 208
            ....::...|  |:.|.|.|:....:..:::.|  .|..:.|:                      
Zfish   155 VIFQVVMEYT--WQKFIIFYDTDYDIRGIENFL--DQTSQQGM---------------------- 193

  Fly   209 EKFVLLDCPSDILVDVINASIGYNMTGSFNHLFLTNLDTHLSGIDGFYSRDFTVAVAAVRIRTYV 273
                      |:.:..:.::|...:||.|..:.:..|..:...:     |...:.::....:.::
Zfish   194 ----------DVSLQKVESNINMMITGMFRTMRVEELHRYRDTL-----RRAVLFMSPATAKAFI 243

  Fly   274 PPPVHDEIDVFD----------NSVDTR---FSSLG----------------------------- 296
            ...|...:..||          :.:|.:   ..|:|                             
Zfish   244 TEVVETNLVAFDCQWIIINEEISDMDVQELVMKSIGRLTLVRQTFPLPQNTSQRCVRNNHRINTS 308

  Fly   297 ---------------SQLVYDSIVLFYNAL-LEISQRPGFYIPNFSC---GRGFWQPGPRLVEQM 342
                           ::.:||:::|..|.. .::..|....:.:.||   |...||.|..::|.:
Zfish   309 LCDPKDPKAQMLEITNRYIYDTVLLLANTFHRKLEDRKWHSMASLSCIRKGSKPWQGGKSMLETV 373

  Fly   343 KQITPKMVKPPFKTQRLQINADGQREDFNLEVY--NPIIDR---VTHI--WNKEFQLVDFEKLRE 400
            |:.....:     |..|:.|.:|...:.:.|:.  |...||   |:.:  |:....|        
Zfish   374 KKGGVSGL-----TSLLEFNDNGSNPNIHFEILGTNYGEDRGRGVSRLATWDPIHGL-------- 425

  Fly   401 NSTQALKQKRLQNKEDFSQKPIRYTVATRVGKPYFSWREEPEGVHYEGNERFEGYAVDLIYMLAQ 465
            |.|  |..::|:|    :.:.:...|.|.:.:|:....|...|    ..::::|:::|::..||.
Zfish   426 NGT--LTDRKLEN----NMRGVVLRVVTVLEEPFVMVSENVLG----KPKKYQGFSIDVLDALAN 480

  Fly   466 ECKFDFNFEPVRDNKYGSYDANTDEWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLG 530
            ...|.:......|:||||..|: ..|:|:|.:|:...|.:|:..||||..|.||||||..:|...
Zfish   481 YLGFKYEIYVAPDHKYGSQQAD-GTWNGLIGELVFKRADVGLSALTITPERESVVDFTTRYMDYS 544

  Fly   531 ISILSYKEPPPKADIYAFLNPYNAEVWLFVMIAMMITAFALIFTGRIDQYEWDQPVENVNREMER 595
            :.:| .::.....|::|.|.|::..:|..:...:::.. .|::.     ..|..|   ....|..
Zfish   545 VGVL-LRKAERTVDMFACLAPFDLSLWACIAGTVLLVG-TLVYL-----LNWLNP---PRLPMGS 599

  Fly   596 QNIWHLSNALWLVLGSMLNQGCDLLPRGLPMRLLTAFWWIFALLISQTYIAKLAAFITSSKIAGD 660
            .:...|.|::|.|.||.:.||.::....|..|::...||:|||::..:|.|.||||:|.|:|...
Zfish   600 VSSTTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGVWWLFALIVISSYTANLAAFLTISRIENS 664

  Fly   661 IGSLHDLVDQNKVQFGTIRGGATSVYFSESNDTDNRMAWNKMLS-----FKPDAFTKNN----EE 716
            |.||.||..|..:.:||:...|  ||....:...|....:.|.|     .......:||    :|
Zfish   665 IQSLQDLAKQTDLPYGTVLDSA--VYDQVRSKGMNPFERDPMYSQMWRMINRTGGAENNVEESKE 727

  Fly   717 GVDRVKLSKGTYAFLMETTNLQYYV--QRNCELTQIGESFGEKHYGIAVPLNADFRSNLSVGILR 779
            |:.:||.  |.:||:.:...|:|..  ..:|.|..:..:..::.||:|:...:.:|...|..||.
Zfish   728 GIRKVKY--GRFAFVWDAAVLEYVAINDEDCSLYTVSNNVADRGYGMAMQHGSPYRDIFSQRILE 790

  Fly   780 LSERGELFKLRNKWFNSNESTCD--SNVPTIDDGQ-FDMDSVGGLFVVLIVGVVVGLVIGVAEFL 841
            |.:.|::..|:.||: ..:|.||  |.|.|...|. .|:.|..|:|.||..|||:..:|...|..
Zfish   791 LQQNGDMDILKLKWW-PRDSPCDLYSPVGTRKSGSALDIHSFAGVFFVLAAGVVLSCLIATVETW 854

  Fly   842 W 842
            |
Zfish   855 W 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..387 CDD:380605 74/438 (17%)
PBP2_iGluR_Kainate 422..795 CDD:270432 107/383 (28%)
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..429 CDD:380614 78/457 (17%)
PBP2_iGluR_delta_2 440..806 CDD:270449 107/385 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.