DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIB and spp-22

DIOPT Version :9

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:NP_001025004.2 Gene:spp-22 / 3565459 WormBaseID:WBGene00044283 Length:149 Species:Caenorhabditis elegans


Alignment Length:70 Identity:19/70 - (27%)
Similarity:29/70 - (41%) Gaps:28/70 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   732 METTNLQYYVQR-------NCELTQIGESFGEKHYGI---AVPLNADFRSNLSVGILRLS----- 781
            |.||| :|||::       :|:|..      ...||:   .:.|..||     :.::||.     
 Worm    35 MLTTN-EYYVEKVNQMAGISCDLCM------RAVYGVNYDFIQLKKDF-----IEMIRLDCEALF 87

  Fly   782 -ERGE 785
             ||.|
 Worm    88 HERPE 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377
ANF_receptor 41..378 CDD:279440
PBP2_iGluR_Kainate 422..795 CDD:270432 19/70 (27%)
Lig_chan 555..822 CDD:278489 19/70 (27%)
spp-22NP_001025004.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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