DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIB and Ir8a

DIOPT Version :9

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster


Alignment Length:1029 Identity:221/1029 - (21%)
Similarity:382/1029 - (37%) Gaps:293/1029 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LVLLALAIASGANEDTLVIKIGAIF---------FDTEMKLADAFSAALEEVNAINPALKLDAIK 62
            |::|.||:....:|   |:||  .|         |||::.:      .|:|::|:...:|:|...
  Fly     5 LLVLLLALRFAGSE---VLKI--TFWIEPVQRAEFDTDIAM------VLKELDALRLDVKVDDTT 58

  Fly    63 RYVT-VDDSIVLQDISCDLIGS-GVAAIFGPSSKTNSDIVE--VLCNMTGIPHLQFDWHPQQSNR 123
            ..:| .:|.:.:|.. |:::.: |.:|:.   ..|.|...|  .|....||.:::.         
  Fly    59 LTLTRSEDGLDMQRF-CEILSTVGASAVI---DLTYSHWEEGYNLVRSLGIGYVRL--------- 110

  Fly   124 ERMNHQLTVNVAPMELFLSAAFSDILASKTFDWKSFTIAYERSSHLIRLQHILAWKQLHKAGIKM 188
            ||:          |..||. .|.|.:..|            |::::     .:.:.....|...|
  Fly   111 ERI----------MRPFLD-MFGDFMRQK------------RANNV-----AMVFMNARDAVEAM 147

  Fly   189 QEFERGDDYRILWKRINNAREKFVLLDCPSDILVDVINASIGYNMTGSFNHLFLTNLDTHLSGID 253
            |:...|..:|.|                       :::||    .|....| ||.          
  Fly   148 QQMLVGYPFRTL-----------------------IMDAS----QTDPGQH-FLE---------- 174

  Fly   254 GFYSRDFTVAVAAVRIRTYVPPPVH-----------------DEIDVFDNSVDTRFSSLGSQLVY 301
                          |||:..|.|.:                 .:.|:|...::..|..|.::   
  Fly   175 --------------RIRSLRPAPTYIALFARAAAMNGIFEKVQKADLFQRPLEWHFVFLDTR--- 222

  Fly   302 DSIVLFYNALLEISQR---------PGFYIPNFSCGRGFWQPGPRLVEQMKQ-ITPKMVKPPFKT 356
             ..|..|....|:..|         ....:|:..||.||......|:..::. |....|.|.:. 
  Fly   223 -DRVFKYRRQAELCTRFTLNPRAICRSMPMPDLYCGSGFTMQRAMLLNVLRSLINAAQVSPGYP- 285

  Fly   357 QRLQINADGQREDFNLEVYNPIIDRVTHIWNKEFQLVDFEKLRENSTQALKQKRLQNKEDFSQKP 421
              |.|..|......:.||.:| :::..:.|   ..:|.:......:..      |.:.:|..|.|
  Fly   286 --LAIYQDCNATASSSEVSDP-LEKDDYNW---LDMVHWSNFLAYAPP------LPHIQDQFQSP 338

  Fly   422 I-RYTVATRVGKPYFS-----------------------------------------W----REE 440
            : ..|.|..:...|:|                                         |    |||
  Fly   339 VPGLTFAVNISAGYYSSEHEAKTDLAAWSSVGEMRLLNETISPARRFFRIGTAESIPWSYLRREE 403

  Fly   441 PEGV---HYEGNERFEGYAVDLIYMLAQECKFDFNFEPVRDNKYGSYDANTDEWDGIIRQLIDNN 502
            ..|.   ...|...:|||.:|.|..|:|:..|:|..........|..: ...||||::..|:...
  Fly   404 GTGELIRDRSGLPIWEGYCIDFIIRLSQKLNFEFEIVAPEVGHMGELN-ELGEWDGVVGDLVRGE 467

  Fly   503 AQIGICDLTITQARRSVVDFTVPFM-QLGISILSYKEPPPKADIYAFLNPYNAEVWLFVMIAMMI 566
            ....|..|.:...|..|:||..|:. |.|||| :.::|..:..::.|:.....||||.::.|::.
  Fly   468 TDFAIAALKMYSEREEVIDFLPPYYEQTGISI-AIRKPVRRTSLFKFMTVLRLEVWLSIVAALVG 531

  Fly   567 TAFALIFTGRIDQYEWDQPVENVNREMERQ------NIWHLSNALWLVLGSMLNQGCDLLPRGLP 625
            ||..:.|   :|:|   .|..:.|   .||      ..:.|..:.|..|.|...||....|:.:.
  Fly   532 TAIMIWF---MDKY---SPYSSRN---NRQAYPYACREFTLRESFWFALTSFTPQGGGEAPKAIS 587

  Fly   626 MRLLTAFWWIFALLISQTYIAKLAAFITSSKIAGDIGSLHDLVDQNKVQFGTIRGGATSVYFSE- 689
            .|:|.|.:|:|.:|:..|:.|.||||:|..::...:.||..|..|:::.:..::...|..||.. 
  Fly   588 GRMLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVQSLEQLARQSRINYTVVKDSDTHQYFVNM 652

  Fly   690 --SNDTDNRMAWNKML-----------------------------SFKPDAFTKNNEEGVDRVKL 723
              :.||..|| |.::.                             |.:|.|..|.....||..: 
  Fly   653 KFAEDTLYRM-WKELALNASKDFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVDAHE- 715

  Fly   724 SKGTYAFLMETTNLQYYVQRNCELTQIGESFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFK 788
             ...|||:.::..::|.:.|||.||::||.|.|:.|.:||...:.....||..||.|.:.....:
  Fly   716 -NADYAFIHDSAEIKYEITRNCNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEE 779

  Fly   789 LRNKWFN-SNESTCDSNVPTIDDGQ-FDMDSVGGLFVVLIVGVVVGLVIGVAEFLWHVQRISVKE 851
            |:.|::| ||...|    |..:|.: ..::|:||:|:..:.|:|:.::....|.|::.::.:..|
  Fly   780 LKAKYWNQSNLPNC----PLSEDQEGITLESLGGVFIATLFGLVLAMMTLGMEVLYYKKKQNALE 840

  Fly   852 KIPPMLALKAEFYFVIRFWLTRKPLHTYRQSRDSTSTGYSSLEQITSASSAKKK 905
                                    :...|...||:.:|.:|.....:|:|..|:
  Fly   841 ------------------------ITQVRPVNDSSGSGGNSSTAPPTATSTTKQ 870

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 73/406 (18%)
ANF_receptor 41..378 CDD:279440 65/367 (18%)
PBP2_iGluR_Kainate 422..795 CDD:270432 114/460 (25%)
Lig_chan 555..822 CDD:278489 84/306 (27%)
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 110/416 (26%)
Lig_chan 520..818 CDD:278489 85/313 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.910

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