DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIB and Grik3

DIOPT Version :9

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:NP_001106187.1 Gene:Grik3 / 298521 RGDID:71027 Length:919 Species:Rattus norvegicus


Alignment Length:927 Identity:271/927 - (29%)
Similarity:447/927 - (48%) Gaps:107/927 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VIKIGAIFFDTEMKLADAFSAALEEVNAINPALKLDA--IKRYVTV---------------DDSI 71
            ||:||.||     :.||..:|  :.:||...|.:..|  |.|..|:               .||.
  Rat    35 VIRIGGIF-----EYADGPNA--QVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSF 92

  Fly    72 VLQDISCDLIGSGVAAIFGPSSKTNSDIVEVLCNMTGIPHLQFDW-HPQQSNRERMNHQLTVNVA 135
            .....:||.:..||.||||||..:.::.|:.:||...:||:|..| |....|::    ...||:.
  Rat    93 EATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKD----TFYVNLY 153

  Fly   136 PMELFLSAAFSDILASKTFDWKSFTIAYERSSHLIRLQHILAWKQLHKAGIKMQEFE-RGDDYRI 199
            |....||.|..|::.|  ..|:|.|:.|:.|:.|||||.::.....:...:|:::.. ..||.|.
  Rat   154 PDYASLSHAILDLVQS--LKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPIDSDDSRP 216

  Fly   200 LWKRINNAREKFVLLDCPSDILVDVINASIGYNMTGSFNHLFLTNLDTHLSGIDGF-YSRDFTVA 263
            |.|.:...||..::.||...:...::..::...|...:.|...|.||.:...::.: ||   .|.
  Rat   217 LLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLYALDLEPYRYS---GVN 278

  Fly   264 VAAVRIRTYVPPPVHDEIDVFD----NSVDTRFSSLGSQLVYDSIVLFYNALLEIS---QR-PGF 320
            :...||.....|.|...::.:.    .:.....|.|...::.....|.|:|:..:|   || |..
  Rat   279 LTGFRILNVDNPHVSAIVEKWSMERLQAAPRAESGLLDGVMMTDAALLYDAVHIVSVCYQRAPQM 343

  Fly   321 YIPNFSCGR-GFWQPGPRLVEQMKQITPKMVKPPFKTQRLQIN-ADGQREDFNLEVYNPIIDRV- 382
            .:.:..|.| ..|:.|.|.:..:|:...:.:     |.|:..| ..|.|.||:|::.:...|.: 
  Rat   344 TVNSLQCHRHKAWRFGGRFMNFIKEAQWEGL-----TGRIVFNKTSGLRTDFDLDIISLKEDGLE 403

  Fly   383 -THIWNKE--FQLVDFEKLR-ENSTQALKQKRLQNKEDFSQKPIRYTVATRVGKPYFSWREEPEG 443
             ..:|:..  ..:.:..|.| .|.|.:|..:.|             .|.|.:.:|:..:|:....
  Rat   404 KVGVWSPADGLNITEVAKGRGPNVTDSLTNRSL-------------IVTTLLEEPFVMFRKSDRT 455

  Fly   444 VHYEGNERFEGYAVDLIYMLAQECKFDFNFEPVRDNKYGSYDANTDEWDGIIRQLIDNNAQIGIC 508
            ::  ||:|||||.:||:..||....|.:....|.|.|||:.| :..:|:|::::|||:.|.:.:.
  Rat   456 LY--GNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQD-DKGQWNGMVKELIDHKADLAVA 517

  Fly   509 DLTITQARRSVVDFTVPFMQLGISILSYKEPPPKADIYAFLNPYNAEVWLFVMIAMMITAFALIF 573
            .||||..|...:||:.|||.||:|||..|.......:::||||.:.::|::|::|.:..:..|..
  Rat   518 PLTITHVREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNPLSPDIWMYVLLAYLGVSCVLFV 582

  Fly   574 TGRIDQYEW-DQPVENVNREMERQNIWHLSNALWLVLGSMLNQGCDLLPRGLPMRLLTAFWWIFA 637
            ..|...||| |....|...|:...| :.|.|:.|..:||::.||.:|:|:.|..|::...||.|.
  Rat   583 IARFSPYEWYDAHPCNPGSEVVENN-FTLLNSFWFGMGSLMQQGSELMPKALSTRIIGGIWWFFT 646

  Fly   638 LLISQTYIAKLAAFITSSKIAGDIGSLHDLVDQNKVQFGTIRGGATSVYFSESNDTDNRMAWNKM 702
            |:|..:|.|.||||:|..::...|.|..||..|.|:::|.::.|||..:|.:|..:.....| ..
  Rat   647 LIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMW-AF 710

  Fly   703 LSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRNCELTQIGESFGEKHYGIAVPLNA 767
            :|.||.|..||||||:.|...:  .||.|||:|.::|..||||.|||||.....|.|||..|:.:
  Rat   711 MSSKPSALVKNNEEGIQRTLTA--DYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGS 773

  Fly   768 DFRSNLSVGILRLSERGELFKLRNKWFNSNESTCDSNVPTIDDGQFDMDSVGGLFVVLIVGVVVG 832
            .:|..:::.||:|.|..:|..::.||:..:....:.|.   :.....:..:||:|:||..|:|:.
  Rat   774 PYRDKITIAILQLQEEDKLHIMKEKWWRGSGCPEEENK---EASALGIQKIGGIFIVLAAGLVLS 835

  Fly   833 LVIGVAEFLWHVQRISVKEKIPPMLALKAEFYFVIRFWLT------RKP-------------LHT 878
            :::.|.||::.:::.:.:|:......:..|    |||.||      .||             :||
  Rat   836 VLVAVGEFIYKLRKTAEREQRSFCSTVADE----IRFSLTCQRRLKHKPQPPMMVKTDAVINMHT 896

  Fly   879 YRQSR----DSTSTGYS 891
            :...|    ||.|...|
  Rat   897 FNDRRLPGKDSMSCSTS 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 100/400 (25%)
ANF_receptor 41..378 CDD:279440 92/366 (25%)
PBP2_iGluR_Kainate 422..795 CDD:270432 136/373 (36%)
Lig_chan 555..822 CDD:278489 91/267 (34%)
Grik3NP_001106187.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 102/402 (25%)
ANF_receptor 55..398 CDD:279440 90/356 (25%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 137/387 (35%)
Lig_chan 564..832 CDD:278489 94/274 (34%)
Glutamate binding 690..692 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349732
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.750

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