DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIB and Gria4

DIOPT Version :9

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:NP_001106655.1 Gene:Gria4 / 29629 RGDID:61863 Length:902 Species:Rattus norvegicus


Alignment Length:885 Identity:236/885 - (26%)
Similarity:405/885 - (45%) Gaps:120/885 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 IASGANEDTLVIKIGAIFFDTEMKLADAFSAAL----EEVNAINPALKLDAIKRYVTVDDSIVLQ 74
            :|.||...:  ::||.:|.....:...||..|:    ...||......|......:...:|..:.
  Rat    18 LAMGAFPSS--VQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVT 80

  Fly    75 DISCDLIGSGVAAIFGPSSKTNSDIVEVLCNMTGIPHLQFDWHPQQSNRERMNHQLTVNVAPMEL 139
            :..|.....||.||||...|.:...:...|:...|..:...:..:..:      |..:.:.|.  
  Rat    81 NAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGES------QFVLQLRPS-- 137

  Fly   140 FLSAAFSDILASKTFDWKSFTIAYERSSHLIRLQHIL------AWKQLHKAGIKMQEFERGDDYR 198
             |..|...:|  ..::|..|...|:.......||.|:      .|   |.:.|.::.| ....||
  Rat   138 -LRGALLSLL--DHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGW---HVSAICVENF-NDVSYR 195

  Fly   199 ILWKRINNAREKFVLLDCPSDILVDVIN--ASIGYNMTGSFNHLFLTNL---DTHL-------SG 251
            .|.:.::..:||..::||..:.|.:::.  .|:|.::.|  .|..:.||   |..|       :.
  Rat   196 QLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKG--YHYIIANLGFKDISLERFIHGGAN 258

  Fly   252 IDGFYSRDFTVAVAAVRI--------RTY----VPPPVHDEIDVFDNSVDTRFSSLGSQLVYDSI 304
            :.||...||...:....:        |.|    .||                  ...|.|.||.:
  Rat   259 VTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPP------------------KYTSALTYDGV 305

  Fly   305 VLF---YNAL----LEISQR--PGFYIPNFSCGRGFWQPGPRLVEQMKQITPKMVKPPFKTQRLQ 360
            ::.   :.:|    ::||:|  .|..:.|.:..   |..|..:...:||:..:.:     |..:|
  Rat   306 LVMAETFRSLRRQKIDISRRGNAGDCLANPAAP---WGQGIDMERTLKQVRIQGL-----TGNVQ 362

  Fly   361 INADGQREDFNLEVY-----NPIIDRVTHIWNKEFQLVDFEKLRE--NSTQALKQKRLQNKEDFS 418
            .:..|:|.::.::|:     .|   |....||...:||..:.:..  |.|.|::.:.:       
  Rat   363 FDHYGRRVNYTMDVFELKSTGP---RKVGYWNDMDKLVLIQDMPTLGNDTAAIENRTV------- 417

  Fly   419 QKPIRYTVATRVGKPYFSWREEPEGVHYEGNERFEGYAVDLIYMLAQECKFDFNFEPVRDNKYGS 483
                  .|.|.:..||..:::..|  .:|||:::|||.|||...:|:.....:....|.|.|||:
  Rat   418 ------VVTTIMESPYVMYKKNHE--MFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGA 474

  Fly   484 YDANTDEWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKEPPPKADIYAF 548
            .||:|..|:|::.:|:...|:|.|..||||..|..|:||:.|||.|||||:..|....|..:::|
  Rat   475 RDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSF 539

  Fly   549 LNPYNAEVWLFVMIAMMITAFALIFTGRIDQYEW--DQPVENVNREMER-QNIWHLSNALWLVLG 610
            |:|...|:|:.::.|.:..:..|....|...|||  ::|.:......:: .|.:.:.|:||..||
  Rat   540 LDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEPEDGKEGPSDQPPNEFGIFNSLWFSLG 604

  Fly   611 SMLNQGCDLLPRGLPMRLLTAFWWIFALLISQTYIAKLAAFITSSKIAGDIGSLHDLVDQNKVQF 675
            :.:.||||:.||.|..|::...||.|.|:|..:|.|.||||:|..::...|.|..||..|.::.:
  Rat   605 AFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAY 669

  Fly   676 GTIRGGATSVYFSESNDTDNRMAWNKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYY 740
            ||:..|:|..:|..|........|..|.|.:|..||:...|||.||:.|||.:|||:|:|..:|.
  Rat   670 GTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYI 734

  Fly   741 VQRN-CELTQIGESFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFNSNESTCDSN 804
            .||. |:..::|.:...|.||:|.|..:..|:.:::.:|:|:|:|.|.||:|||: .::..|.|.
  Rat   735 EQRKPCDTMKVGGNLDSKGYGVATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWW-YDKGECGSG 798

  Fly   805 VPTIDD--GQFDMDSVGGLFVVLIVGVVVGLVIGVAEFLW 842
            .....|  ....:.:|.|:|.:|:.|:.:.:::.:.||.:
  Rat   799 GGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 82/414 (20%)
ANF_receptor 41..378 CDD:279440 75/384 (20%)
PBP2_iGluR_Kainate 422..795 CDD:270432 136/376 (36%)
Lig_chan 555..822 CDD:278489 91/272 (33%)
Gria4NP_001106655.1 PBP1_iGluR_AMPA_GluR4 28..398 CDD:107383 83/415 (20%)
ANF_receptor 39..380 CDD:279440 75/383 (20%)
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 136/396 (34%)
Lig_chan 546..825 CDD:278489 93/279 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349728
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.840

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