DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIB and gria2a

DIOPT Version :9

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:XP_005170953.1 Gene:gria2a / 170450 ZFINID:ZDB-GENE-020125-3 Length:893 Species:Danio rerio


Alignment Length:935 Identity:246/935 - (26%)
Similarity:402/935 - (42%) Gaps:201/935 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHGLQFLVLLALAIAS------------GANEDTLVIKIGAIFFDT-EMKLADAFSAALEEVNAI 52
            :.||....|..||:..            ||:::....:||.:.|.| |.:|..            
Zfish     3 LSGLLLPALWGLALGGSPSVQIGGLFPRGADQEYSAFRIGMVQFGTAEFRLTP------------ 55

  Fly    53 NPALKLDAIKRYVTVDDSIVLQDISCDLIGSGVAAIFGPSSKTNSDIVEVLCNMTGIPHLQFDWH 117
                .:|.::    |.:|..:.:..|.....||.||||...|.:.:.:...|....:..:...:.
Zfish    56 ----HIDNLE----VANSFAITNCFCSQFSRGVYAIFGFYDKKSVNTITSFCETLHVSFITPSFP 112

  Fly   118 PQQSNRERMNHQLTVNVAPMELFLSAAFSDI---LAS--KTFDWKSFTIAYERSSHLIRLQHIL- 176
            ....|      |..:.:.|          ||   |.|  :.:.|:.|...|:....|..||.:| 
Zfish   113 ADGLN------QFVLQMRP----------DIKGPLISLVEYYKWEKFAYLYDSDRGLSTLQAVLD 161

  Fly   177 --AWKQLHKAGIKMQEFE---RGDDYRILWKRINNAREKFVLLDCPSDILVDVIN--ASIGYNMT 234
              |.::.....|.:...:   :.:.||.|::.:.|..|:.|:|||..|.:.|::.  .:||.::.
Zfish   162 TAAERKWQVTAINVGNLKDEWKDEAYRSLFQDLENKNERRVILDCEQDKVKDIMEQVITIGRHVK 226

  Fly   235 GSFNHLFLTN---LDTHLS-------GIDGFYSRDFTVAVAAVRIRTYVPPPVHDEIDVFDNSVD 289
            |  .|..:.|   :|..||       .:.||...||...:.|                    ..|
Zfish   227 G--YHYIIANFGFVDGDLSKIQYGGANVSGFQIVDFDDPLVA--------------------KFD 269

  Fly   290 TRFSSL--------------GSQLVYDSIVLFYNAL-------LEISQR---------PGFYIPN 324
            .|:.:|              .|.|.||::.:...|.       ::||:|         |.  :| 
Zfish   270 QRWEALEEKEYPGADSRIRYTSALTYDAVQVMTEAFRFLHKQRIDISRRGNNGDCLANPA--VP- 331

  Fly   325 FSCGRGFWQPGPRLVEQMKQITPKMVKPPFKTQRLQINADGQREDFNLEVY-----NPIIDRVTH 384
                   |..|..:...:||     |:....|..:|.:..|:|.::.:.|.     .|:  ::.:
Zfish   332 -------WAQGVEIERALKQ-----VRVDGLTGNIQFDQYGRRVNYTVNVMELKNSGPV--KIGY 382

  Fly   385 IWNK-EFQLVDFEKLRENSTQALKQKRLQNKEDFSQKPIRYTVATRVGKPYFSWREEPEGVHYEG 448
             ||: :...|....|..|.|..::.|.:             .|.|.:..||...::..|  .:..
Zfish   383 -WNEMDKMAVTKSDLFPNDTMGMENKTV-------------IVTTILEAPYVMLKKNAE--LFTD 431

  Fly   449 NERFEGYAVDLIYMLAQECKFDFNFEPVRDNKYGSYDANTDEWDGIIRQLIDNNAQIGICDLTIT 513
            |||:|||.|||...:|:.|.|.:....|.|.|||:.||.|..|:|::.:|:...|.|.:..||||
Zfish   432 NERYEGYCVDLAAEIAKHCGFKYQLRIVADGKYGARDAETKIWNGMVGELVYGKADIAVAPLTIT 496

  Fly   514 QARRSVVDFTVPFMQLGISILSYKEPPPKADIYAFLNPYNAEVWLFVMIAMMITAFALIFTGRID 578
            ..|..|:||:.|||.|||||:..|....|..:::||:|...|:|:.::.|.:..:..|....|..
Zfish   497 LVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFS 561

  Fly   579 QYEWDQ---------PVENVNREMERQNIWHLSNALWLVLGSMLNQGCDLLPRGLPMRLLTAFWW 634
            .|||..         |.|:.|.       :.:.|:||..||:.:.||||:.||.|..|::...||
Zfish   562 PYEWHTEEFEDGQLGPSESTNE-------FGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWW 619

  Fly   635 IFALLISQTYIAKLAAFITSSKIAGDIGSLHDLVDQNKVQFGTIRGGATSVYFSESNDTDNRMAW 699
            .|.|:|..:|.|.||||:|..::...|.|..||..|.::.:||:..|:|..:|..|........|
Zfish   620 FFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDAGSTKEFFRRSKIALFDKMW 684

  Fly   700 NKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRN-CELTQIGESFGEKHYGIAV 763
            ..|.|.:|..|.||..|||.||:.|||.||:|:|:|..:|..||. |:..::|.:...|.||||.
Zfish   685 QYMKSAEPSVFVKNTVEGVLRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIAT 749

  Fly   764 PLNADFRSNLSVGILRLSERGELFKLRNKWF-----------NSNESTCDSNVPTIDDGQFDMDS 817
            |..:..|:.:::.:|:|:|:|.|.||:|||:           .|.|.|          ....:.:
Zfish   750 PKGSALRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGESKEKT----------SALSLSN 804

  Fly   818 VGGLFVVLIVGVVVGLVIGVAEFLW 842
            |.|:|.:|:.|:.:.:::.:.||.:
Zfish   805 VAGVFYILVGGLGLAMLVALVEFCY 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 84/426 (20%)
ANF_receptor 41..378 CDD:279440 75/394 (19%)
PBP2_iGluR_Kainate 422..795 CDD:270432 140/393 (36%)
Lig_chan 555..822 CDD:278489 94/287 (33%)
gria2aXP_005170953.1 Periplasmic_Binding_Protein_Type_1 23..391 CDD:299141 86/443 (19%)
ANF_receptor 51..373 CDD:279440 76/394 (19%)
PBP2_iGluR_AMPA 406..783 CDD:270433 141/398 (35%)
Lig_chan 538..816 CDD:278489 96/294 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591074
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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