DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIB and GRIN3B

DIOPT Version :10

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:NP_619635.1 Gene:GRIN3B / 116444 HGNCID:16768 Length:1043 Species:Homo sapiens


Alignment Length:455 Identity:128/455 - (28%)
Similarity:189/455 - (41%) Gaps:83/455 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   454 GYAVDLIYMLAQECKFDFNFEPVRDNKYGSYDANTDEWDGIIRQLIDNNAQIGICDLTITQARRS 518
            ||.:||:..||::..|||....|.|.|||:  .....|.|::..|:...|.:.:...:|..||..
Human   478 GYCIDLLERLAEDTPFDFELYLVGDGKYGA--LRDGRWTGLVGDLLAGRAHMAVTSFSINSARSQ 540

  Fly   519 VVDFTVPFM--QLGISILSYKEPPPKADIYAFLNPYNAEVWLFVMIAMMITAFALIFTGRIDQYE 581
            |||||.||.  .|||.:.:.....|   |.||:.|.:...||.|..|:.:||..|..      ||
Human   541 VVDFTSPFFSTSLGIMVRARDTASP---IGAFMWPLHWSTWLGVFAALHLTALFLTV------YE 596

  Fly   582 WDQPVENVNREMERQNIWHLSNALWLVLGSMLNQ-------GCDLLPRGLPMRLLTAFWWIFALL 639
            |..|.....|...|..::..|:||.|....:..:       .|   |.|   |||...|.||.||
Human   597 WRSPYGLTPRGRNRSTVFSYSSALNLCYAILFRRTVSSKTPKC---PTG---RLLMNLWAIFCLL 655

  Fly   640 ISQTYIAKLAAFITSSKIAGDIGSLHDLVDQNKVQ---FGTIRGGATSVYFSESNDTDNRMAWNK 701
            :..:|.|.|||.:...|...::..:||....:..|   |||:...:...|..:|           
Human   656 VLSSYTANLAAVMVGDKTFEELSGIHDPKLHHPAQGFRFGTVWESSAEAYIKKS----------- 709

  Fly   702 MLSFKPDAF-------TKNNEEGV-----DRVKLSKGTYAFLMETTNLQYYV--QRNCELTQIGE 752
                .||..       ......||     |..||:    ||:|:.:.|.|.|  ..:|:|..:|:
Human   710 ----FPDMHAHMRRHSAPTTPRGVAMLTSDPPKLN----AFIMDKSLLDYEVSIDADCKLLTVGK 766

  Fly   753 SFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFNSNESTCDSNVPTIDDG-QFDMD 816
            .|..:.|||.:|.|:...||||..|.|....|.:..|.:||:..  ..|...|..:.:. |..:.
Human   767 PFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYKM--VPCGKRVFAVTETLQMSIY 829

  Fly   817 SVGGLFVVLIVGVVVGLVIGVAE---FLWHVQRISVKEKIPPMLALKAEFYFVIRFWL-TRKPLH 877
            ...||||:|.:|:...|:..:.|   |...:.||....:              :::|| |.:.:|
Human   830 HFAGLFVLLCLGLGSALLSSLGEHAFFRLALPRIRKGSR--------------LQYWLHTSQKIH 880

  Fly   878  877
            Human   881  880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..387 CDD:380605
PBP2_iGluR_Kainate 422..795 CDD:270432 110/366 (30%)
GRIN3BNP_619635.1 PBP1_iGluR_NMDA_NR3 29..401 CDD:380600
PBP2_iGluR_NMDA_Nr3 415..808 CDD:270438 109/365 (30%)
Lig_chan 574..841 CDD:459656 82/299 (27%)
Blue background indicates that the domain is not in the aligned region.

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