DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIB and LOC110438919

DIOPT Version :9

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:XP_021328141.1 Gene:LOC110438919 / 110438919 -ID:- Length:1417 Species:Danio rerio


Alignment Length:792 Identity:168/792 - (21%)
Similarity:316/792 - (39%) Gaps:173/792 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 ASIGYNMTGSFNHLFLTNLDTHLSGIDGFYSRDFTVAVAAVRIRTYVPPPVHDEIDVFDNSVDTR 291
            ||:..|:...::....:.:.|:..|.     :||...:.:....::|...: :|:.:.|.|||..
Zfish    13 ASVMLNIMEEYDWYIFSIVTTYYPGY-----QDFVTKIRSTIENSFVGWEL-EEVLLLDMSVDDG 71

  Fly   292 FSSLGSQL--VYDSIVLFY------NALLEISQRPG-------FYIPNFSCGRGFWQP------- 334
            .:.:.:.|  :...::|.|      |.:.:::...|       :.:|:...|.....|       
Zfish    72 DAKIQNLLKKLQSPVILLYSTKEEANIIFQVAHSVGLTGYGYTWIVPSLVAGDADHIPAEFPTGM 136

  Fly   335 ----------------------------------GPR----------------LVEQMKQITPKM 349
                                              ||.                :.....::...:
Zfish   137 ISVSYDEWDYGLEARVRDGVAVIATATSTMMMDRGPHTLLKSECHGAPDKKSPMTGNNNEVLRYL 201

  Fly   350 VKPPFKTQRLQINADGQREDFNLEVY---------------NPIIDRVTHIWNKEFQLVDFEKLR 399
            :...|:.:.|..:.||.:....|.:.               |..:....|:|.: |:|....:.|
Zfish   202 MNVTFEGRNLSFSEDGYQMHPKLVIILLDKERQWDRVGKWENGSLSMKYHVWPR-FELYSGPEAR 265

  Fly   400 EN---STQALKQKRLQNKED---FSQKPIRYTVATRVGKPYFSWREEPEGVHYEGNERFEGYAVD 458
            |:   |...|::......||   .|...:|.||..|  |...:..:..:...|. ....:|:.:|
Zfish   266 EDDHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCR--KQLKALNQTQDSAVYI-KRCCKGFCID 327

  Fly   459 LIYMLAQECKFDFNFEPVRDNKYGSYDANTDEWDGIIRQLIDNNAQIGICDLTITQARRSVVDFT 523
            ::..:|:..||.::...|.:.|:|.....|  |:|::.:::..||.:.:..|||.:.|..|:||:
Zfish   328 ILKKIAKNVKFTYDLYLVTNGKHGKKINGT--WNGMVGEVVLKNAHMAVGSLTINEERSEVIDFS 390

  Fly   524 VPFMQLGISIL---SYKEPPPKADIYAFLNPYNAEVWLFVMIAMMITAFALIFTGRIDQYEWDQP 585
            |||::.|||::   |.....|.    |||.|::|:||:.:.:.:::.:...:|.     :|:..|
Zfish   391 VPFIETGISVMVSRSNGTVSPS----AFLEPFSADVWIMMFVMLLLVSAIAVFI-----FEYFSP 446

  Fly   586 VENVNREMERQN-----IWHLSNALWLVLGSMLNQGCDLL-PRGLPMRLLTAFWWIFALLISQTY 644
            | ..||.:....     .:.:..|:||:.|.:.|....:. |||...:::.:.|..||::...:|
Zfish   447 V-GYNRCLADGREAGGPSFTIGKAIWLLWGLVFNNSVPVQNPRGTTSKIMVSVWAFFAVIFLASY 510

  Fly   645 IAKLAAFITSSKIAGDIGSLHDLVDQN------KVQFGTIRGGATSVYFSESNDTDNRMAWNKML 703
            .|.||||:...:....:..|.|...||      ..:|||:..|:|     |.|..:|   :..|.
Zfish   511 TANLAAFMIQEEYVDQVSGLSDKKFQNPNDFSPPFRFGTVPNGST-----ERNIRNN---YRDMH 567

  Fly   704 SFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRN--CELTQIGES--FGEKHYGIAVP 764
            |:......:|..|.::.:|..| ..||:.:...|.|...|:  |:|..||..  |....||||:.
Zfish   568 SYMVKFHQRNVVEALESLKTGK-LDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQ 631

  Fly   765 LNADFRSNLSVGILRLSERGELFKLRNKWFNSNESTCDSNVPTIDDGQFDMDSVGGLFVVLIVGV 829
            .::.::..:.:.||:|...||:.:|...|..   ..|......:...|.|:|::.|:|.:|...:
Zfish   632 KDSGWKRQVDLAILQLFGDGEMEELEALWLT---GICHHEKNEVMSSQLDVDNMAGVFYMLGAAM 693

  Fly   830 VVGLVIGVAE--FLWHVQRISVKEKIPPMLALKAEFYFVIRFWLTRKPLHTYRQSRDSTSTGYSS 892
            .:.|:..:||  |.||::                   |......:.||..|:..||:.    ||.
Zfish   694 ALSLITFIAEHVFYWHMR-------------------FCFMGVCSGKPGFTFTISREI----YSC 735

  Fly   893 LE--QITSASSA 902
            :.  :|...|||
Zfish   736 IHGVEIEDKSSA 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 32/252 (13%)
ANF_receptor 41..378 CDD:279440 29/237 (12%)
PBP2_iGluR_Kainate 422..795 CDD:270432 103/391 (26%)
Lig_chan 555..822 CDD:278489 69/282 (24%)
LOC110438919XP_021328141.1 PBP1_iGluR_NMDA_NR2 <1..255 CDD:107373 31/247 (13%)
PBP2_iGluR_NMDA_Nr2 267..667 CDD:270436 109/426 (26%)
DUF4013 <389..478 CDD:315788 26/98 (27%)
NMDAR2_C 704..1417 CDD:313729 15/67 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590995
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.