DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIB and grid2

DIOPT Version :9

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:XP_031759030.1 Gene:grid2 / 100487676 XenbaseID:XB-GENE-955038 Length:1007 Species:Xenopus tropicalis


Alignment Length:921 Identity:210/921 - (22%)
Similarity:393/921 - (42%) Gaps:152/921 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 IASGANEDTLVIKIGAIFFDTEMKLADAFSAALEEVNAINPALKLDAIKRYVT-VDDSIVLQDI- 76
            ::.|......:|.|||||.::..|..:.|..|:.::|.....|:.:.|...|| ||.:...|.: 
 Frog    16 VSWGRTRADSIIHIGAIFDESAKKDDEVFRMAVADLNLNEDILQTEKITFSVTFVDGNNPFQAVQ 80

  Fly    77 -SCDLIGSGVAAIFGPSSKTNSDIVEVLCNMTGIPHLQFDWHPQQSNRERMNHQ-------LTVN 133
             :|||:..|:.|:.......::..::.|.:...||||.......::.|.....|       .|::
 Frog    81 EACDLMSQGILALVSSIGCASAGSLQSLADAMHIPHLFIQRSTARTPRSGCGLQRSSGIDDYTLS 145

  Fly   134 VAPMELFLSAAFSDILASKTFDWKSFTIAYERSSHLIRLQHILAWKQLHKAGIKMQEFERGDDYR 198
            |.| .::|:.....::..  :.|:.|.:.|:.:..:..:|..|.........:.:|:.|...:..
 Frog   146 VRP-PVYLNDVILRVVTE--YAWQKFIVFYDNNYDIRGIQEFLDRVSQQGMDVALQKVENNINRM 207

  Fly   199 ILW-------KRINNARE---KFVLLDCPSD---ILVDVINASIGYNMTGSFNHLFLTNLDTHLS 250
            |..       :.:|..|:   :.:|:..|:.   .:.:|:..    |:.....|..:.|.:.:..
 Frog   208 ITGLFATMRIEELNRYRDTLRRAILVMSPTTAKAFITEVVET----NLVAFDCHWIIINEEINDL 268

  Fly   251 GIDGFYSRD---FTVAVAAVRIRTYVPPP-----------------VHDEIDVFDNSVDTRFSSL 295
            .:.....|.   .|:      ||...|.|                 :.|..|.|..:::     :
 Frog   269 DVQELVRRSIGRLTI------IRQTFPVPHNSSQRCFRGNHRISTSLCDPKDPFSQNME-----I 322

  Fly   296 GSQLVYDSIVLFYNAL-LEISQRPGFYIPNFSCGRGF---WQPGPRLVEQMKQITPKMVKPPFKT 356
            .:..:||:::|..||. .::..|....:.:.:|.|..   ||.|..::|.:|:.....:     |
 Frog   323 TNMYIYDTVLLLANAFHKKLEDRKWHSMASLTCIRKNSKPWQGGRSMLETVKKGGVSGL-----T 382

  Fly   357 QRLQINADGQREDFNLEV----YNPIIDRVTH---IWNKEFQLVDFEKLRENSTQALKQKRLQNK 414
            ..|..:.||...:...|:    |...:.|...   .||....|          ..:|..::|:| 
 Frog   383 GALDFSEDGGNPNIYFEILGTNYGEELGRGIRKLGFWNPVTGL----------NGSLTDRKLEN- 436

  Fly   415 EDFSQKPIRYTVATRVGKPYFSWREEPEGVHYEGNERFEGYAVDLIYMLAQECKFDFNFEPVRDN 479
               :.:.:...|||.:.:|:....|...|    ..::::|:::|::..|:....|.:......|:
 Frog   437 ---NMRGVVLRVATVLEEPFVMVSENVLG----KPKKYQGFSIDVLDALSSYLGFKYEIYVASDH 494

  Fly   480 KYGSYDANTDEWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKEPPPKAD 544
            ||||..|: ..|:|:|.:|:...|.:||..||||..|.:|||||..:|...:.:| .::.....|
 Frog   495 KYGSPQAD-GSWNGLIGELLLKRADMGISALTITPDRENVVDFTTRYMDYSVGVL-LRKAEKTVD 557

  Fly   545 IYAFLNPYNAEVWLFVMIAMMITAFALIFTGRIDQYEWDQPVENVNREMERQNIWHLSNALWLVL 609
            ::|.|.|::..:|..:...:::... |::.     ..|..|   ...:|.......|.|::|.|.
 Frog   558 MFACLAPFDLSLWACIAGTVLLVGL-LVYL-----LNWLNP---PRLQMGSMTSTTLYNSMWFVY 613

  Fly   610 GSMLNQGCDLLPRGLPMRLLTAFWWIFALLISQTYIAKLAAFITSSKIAGDIGSLHDLVDQNKVQ 674
            ||.:.||.::....|..|::...||:|||::..:|.|.||||:|.|:|...|.||.||..|..:.
 Frog   614 GSFVQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLTISRIESSIQSLQDLSRQTDIP 678

  Fly   675 FGTIRGGAT---------------SVY------FSESNDTDNRMAWNKMLSFKPDAFTKNNEEGV 718
            :||:...|.               |:|      .:.||.::|.:              :.:.||:
 Frog   679 YGTVFDSAVYEHVRVKGMNPFERDSMYSQMWRMINRSNGSENNV--------------QESLEGI 729

  Fly   719 DRVKLSKGTYAFLMETTNLQYYV--QRNCELTQIGESFGEKHYGIAVPLNADFRSNLSVGILRLS 781
            .:||  .|.|||:.:...|:|..  .::|....:|.:..::.||||:...:.:|...|..||.|.
 Frog   730 QKVK--HGNYAFVWDAAVLEYIAINDQDCSFYTVGNTIADRGYGIALQHGSPYRDIFSQRILELQ 792

  Fly   782 ERGELFKLRNKWFNSNESTCD--SNVPTIDDG-QFDMDSVGGLFVVLIVGVVVGLVIGVAEFLWH 843
            :.|::..|::||:..| ..|:  |::.|...| ..|:.|..|:|.:|..|:|:...|.:.|..|:
 Frog   793 QNGDMDILKHKWWPRN-GQCELHSSMDTKQKGSSLDIKSFSGVFCILAAGIVLSCFIAMVETWWN 856

  Fly   844 VQ---RISVKE 851
            .:   |:..||
 Frog   857 KKKGSRVPSKE 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 79/420 (19%)
ANF_receptor 41..378 CDD:279440 70/387 (18%)
PBP2_iGluR_Kainate 422..795 CDD:270432 107/395 (27%)
Lig_chan 555..822 CDD:278489 76/292 (26%)
grid2XP_031759030.1 Periplasmic_Binding_Protein_type1 28..429 CDD:415822 80/433 (18%)
PBP2_iGluR_delta_2 440..806 CDD:270449 107/396 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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