DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIB and grin3bb

DIOPT Version :9

Sequence 1:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:985 Identity:216/985 - (21%)
Similarity:362/985 - (36%) Gaps:209/985 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 IKIGAIF-----FDTEMKLADAFSAALEEVNAINP-ALKLDAIKRYVTVDDSIVLQDISC-DLIG 82
            :::||:.     ......|..|.|...|..|...| .|.||.:.|.....|...|....| |::.
Zfish    47 VRLGALLPPRQSVRVRAALHRALSGLAESGNNFLPYNLSLDVVAREAQSGDPESLFRCVCQDIVV 111

  Fly    83 SGVAAIFGPSSKTNSDIV--EVLCNMTGIPHLQFDWHPQQ-SNRERMNHQLTVNVAP---MELFL 141
            .||:|:.. ..:|..:||  |.:.:...||.:....|.:. ..:.|.:.|:|..:.|   :||.|
Zfish   112 QGVSAVLA-FPQTQEEIVQMEFMSSFLEIPFISIIEHGEPLKTQNRFHLQMTTRIPPSGLVELLL 175

  Fly   142 S----AAFSDILASKTFDWKSFTIAYERSSHLIRLQHILAW--KQLH-KAGIKMQ----EFERGD 195
            :    :.:.:.:|.....|:...:.     .|::||....|  .|.| :|.:.:.    ......
Zfish   176 AVLQRSGWEESMAVLCHGWEDAGLL-----DLLKLQGRFGWGPSQWHLRAALNLSHSTARMANIS 235

  Fly   196 DYRILWKRINNAREKFVLL-----DCPSDIL-------------------------VDVINASIG 230
            |:......::::....|||     :|.|.:|                         :..|...:|
Zfish   236 DFLSEHFNLDHSPPASVLLFGADPECASSVLRSAHDLGLTLPTVHWIMGHPLSPDALHSIGLPLG 300

  Fly   231 YNMTGSFNHLFLTNLDTHLSGIDGFYSRDFTVAVAAVRIRTYVPPP---VHDEIDVFDNSVDTRF 292
            ....|..:|   ..||.::|......:|..|.|       |.|.|.   :.:.::.||.......
Zfish   301 LLAYGEVDH---KPLDFYISDALQLINRAVTAA-------TVVRPDLALIQNMVNCFDKPNKHEL 355

  Fly   293 SSLGSQLVYDSIVLFYNALLEISQRPGFYIPNFSCGRGF-WQPGPRLVEQMKQITPKMVKPPFKT 356
            .|.|.                       ||..|.....| ...||.:|::    ....|....|.
Zfish   356 PSSGQ-----------------------YIARFLSNTSFVGLTGPVIVQR----NLSRVHTSHKV 393

  Fly   357 QRLQINADGQREDFNLEVYNPIIDRVTHI----WNKEFQLVDFEKLRENSTQALKQKRLQNKE-- 415
            ....:..|.             :.:.|.:    |......|:.:.|.:.|:...:.:....:|  
Zfish   394 HIWSLRRDA-------------VGQPTWVTVGSWEGGRLNVEEQGLWQGSSPRQRTEGQMGREGR 445

  Fly   416 ----DFSQKPIRYTVATRVGKPYFSWREE------PEGVH-------------------YEGNER 451
                .|.....|..|.|.|..|:...||.      |.|.:                   .:||:.
Zfish   446 RWRAGFPVSGSRLRVVTLVEHPFVFTREVDEDGNCPAGQYCLDAGTNSSETLDHLYAERAQGNKS 510

  Fly   452 F---------EGYAVDLIYMLAQECKFDFNFEPVRDNKYGSYDANTDEWDGIIRQLIDNNAQIGI 507
            |         .||.:||:..|:::..|:|:...|.|.|||:....  :|.|::..|:...|.:.:
Zfish   511 FLPPDYSKCCYGYCIDLLEKLSEDMNFEFDLYIVGDGKYGAVKGG--QWTGLVGDLLSGVADMAV 573

  Fly   508 CDLTITQARRSVVDFTVPFMQLGISILSYKEPPPKADIYAFLNPYNAEVWLFVMIAMMITAFALI 572
            ...:|..||..|:|||.||....:.|| .:.....|.|.||:.|.:..:|:.:.:|:.|||..|.
Zfish   574 TSFSINSARSKVIDFTSPFFSTSLGIL-VRSKDTAAPIGAFMWPLHWSMWMGIFVALHITALFLT 637

  Fly   573 FTGRIDQYEWDQPVENVNREMERQNIWHLSNALWLVLGSMLNQG-CDLLPRGLPMRLLTAFWWIF 636
            .      |||..|.........|..::..|:||.|....:..:. ....|:....|.|...|.||
Zfish   638 L------YEWKSPFGMTPHGRNRVKVFSYSSALNLCYAILFGRTVSSKTPKCWTGRFLMNLWAIF 696

  Fly   637 ALLISQTYIAKLAAFITSSKIAGDIGSLHDLVDQNKVQ---FGTIRGGATSVYFSESNDTDNRMA 698
            .||:..:|.|.|||.:...|...::..:||....:..|   |||:|..:...|..:|        
Zfish   697 CLLVLSSYTANLAAVMVGEKTFEEVSGIHDAKLHHPSQGFRFGTVRESSAEDYMKKS-------- 753

  Fly   699 WNKMLSFKPDAFTKNNE----EGVDRVKLSKGTY-AFLMETTNLQYYV--QRNCELTQIGESFGE 756
            :.:|..:    ..|.||    :||..:|...... ||:|:...|.|.|  ..:|:|..:|:.|..
Zfish   754 FPEMHEY----MRKFNEPTTPDGVATLKTDPPQLDAFIMDKALLDYEVSIDADCKLLTVGKPFAI 814

  Fly   757 KHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFNSNESTCDSNVPTIDDG-QFDMDSVGG 820
            :.|||.:|.|:...||:|..:.|....|.:..|.:||:  ....|...|..:.:. |..:....|
Zfish   815 EGYGIGLPQNSPLTSNISEFVSRYKSDGYMDMLHDKWY--KVVPCGKRVFAVTETLQMGIRHFSG 877

  Fly   821 LFVVLIVGVVVGLVIGVAEFLWHVQRISVKEKIPPMLALKAEFYFVIRFWLTRKPLHTYRQSRDS 885
            |||:|.|||...|:....|..::       ..:.|.:..|.:|    ::|     |||.::...:
Zfish   878 LFVLLCVGVTGALLTLAGEHAFY-------RLVLPHIRRKQKF----KYW-----LHTSQKIHRA 926

  Fly   886 TSTGYSSLEQ 895
            .:..|..:::
Zfish   927 LNMTYEDVKR 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 78/428 (18%)
ANF_receptor 41..378 CDD:279440 73/389 (19%)
PBP2_iGluR_Kainate 422..795 CDD:270432 112/417 (27%)
Lig_chan 555..822 CDD:278489 72/278 (26%)
grin3bbXP_017213803.2 PBP1_iGluR_NMDA_NR3 29..428 CDD:107372 80/436 (18%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 111/415 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591052
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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