DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIA and GLR1.1

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_187061.1 Gene:GLR1.1 / 819566 AraportID:AT3G04110 Length:808 Species:Arabidopsis thaliana


Alignment Length:968 Identity:185/968 - (19%)
Similarity:339/968 - (35%) Gaps:279/968 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VIYAFIIIIGFLEGIIALGGDDR--NEITVGAIFYENE---KEIELSFDQAFREVNNMKFSELRF 66
            ::::..|:.....|::|...||.  .|:.||.:...:.   |.:|.||:.|..:...:.......
plant     3 ILFSISILALLFSGVVAAPSDDDVFEEVRVGLVVDLSSIQGKILETSFNLALSDFYGINNGYRTR 67

  Fly    67 VTIKRYMPTNDSFLLQQITCELISNGVA-AIFGPSSKAASDIVAQIANATGIPHI---------- 120
            |::.......|..:......:|:.|..| ||.|..|...:.::|.|:....:|.|          
plant    68 VSVLVRDSQGDPIIALAAATDLLKNAKAEAIVGAQSLQEAKLLATISEKAKVPVISTFLPNTLSL 132

  Fly   121 -EYDLKLEATRQEQLNHQMSINVAPSLSVLSRAYFEIIKSNYEWRTFTLIYETPEGLARLQDLMN 184
             :||..::.|      |..:.......|::         .::..::..:|||..:..:....:: 
plant   133 KKYDNFIQWT------HDTTSEAKGITSLI---------QDFSCKSVVVIYEDADDWSESLQIL- 181

  Fly   185 IQALNSDYVKLRNLADYA----------DDYRILWKETDETF--HEQRIIL----DCEPK----- 228
            ::......:.:...|.:|          :..|.|.......|  |...|::    .|..|     
plant   182 VENFQDKGIYIARSASFAVSSSGENHMMNQLRKLKVSRASVFVVHMSEILVSRLFQCVEKLGLME 246

  Fly   229 ----------TLKELLKVSIDFKLQG--PFRNWFLTHLDTHN--SGLRDIYNEDFKANITSVRLK 279
                      |:..|...:|...:||  .|:::.....:..|  |.||....:|.:...:||.:.
plant   247 EAFAWILTARTMNYLEHFAITRSMQGVIGFKSYIPVSEEVKNFTSRLRKRMGDDTETEHSSVIIG 311

  Fly   280 VVDANPFERKKTRLTKVDQILGNQTMLPILIYDAVVLFASSAR-----NVIAAMQPFHPPNRHCG 339
            :           |...:..||.|          ||..|:.|.:     ||.|.:......:|..|
plant   312 L-----------RAHDIACILAN----------AVEKFSVSGKVEASSNVSADLLDTIRHSRFKG 355

  Fly   340 SSSPWMLGAFIVNEMKTISEDDVEPHFKTENMKLDE-----------YGQRIHFNLEIYKPTVNE 393
            .|     |...:::.|.|||.     |:..|:..::           :.||              
plant   356 LS-----GDIQISDNKFISET-----FEIVNIGREKQRRIGLWSGGSFSQR-------------- 396

  Fly   394 PMMVW------TPDNGI-----KKRLLNLELESAGTTQDFSEQRKVYTVVTHYEEPYFMMKEDHE 447
            ..:||      .|.:.:     :|::|.: |.:||        .||..:|:        ::.|.|
plant   397 RQIVWPGRSRKIPRHRVLAEKGEKKVLRV-LVTAG--------NKVPHLVS--------VRPDPE 444

  Fly   448 NFRGREKYEGYAVDLISKLSELMEFDYEFMIVNGNGK-----YNPETKQWDGIIRKLIDHHAQIG 507
            .  |.....|:.|::.........::.||:...||..     .:.:..::|          |.:|
plant   445 T--GVNTVSGFCVEVFKTCIAPFNYELEFIPYRGNNDNLAYLLSTQRDKYD----------AAVG 497

  Fly   508 VCDLTITQMRRSVVDFTVPFMQLGISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAF 572
              |:|||..|...||||:|:..:||.||..|.  :.:..:.|.:||...:|: ...|..::|...
plant   498 --DITITSNRSLYVDFTLPYTDIGIGILTVKK--KSQGMWTFFDPFEKSLWL-ASGAFFVLTGIV 557

  Fly   573 VFIARLSYREWLPPNPAIQDPDELENIW--NVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMWW 635
            |::...|.      ||      |.:..|  .::...|....:|:....:.|.: ...|.|..:|.
plant   558 VWLVERSV------NP------EFQGSWGQQLSMMLWFGFSTIVFAHREKLQK-MSSRFLVIVWV 609

  Fly   636 FFALMMLSTYTANLAAFLTSNKWQSSIKSLQDLIEQDKVHFGSMRGGSTSLFFSESNDTDYQRAW 700
            |..|::.|:|:|||.:..|.::.|              ::...:.||||:...::....:...|:
plant   610 FVVLILTSSYSANLTSTKTISRMQ--------------LNHQMVFGGSTTSMTAKLGSINAVEAY 660

  Fly   701 NQ-MKDFN------------------PSAFTSTNKEGVARVRKEKGGYAFLMETTSLTYNIERNC 746
            .| ::|..                  |:.|..|:     ||....|                   
plant   661 AQLLRDGTLNHVINEIPYLSILIGNYPNDFVMTD-----RVTNTNG------------------- 701

  Fly   747 DLTQIGEQIGEKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKWWKN------HNVTCDSY 805
                         :|.....|||....:|..|.:|...|.|:.|:.||::.      |:.|.:..
plant   702 -------------FGFMFQKGSDLVPKVSREIAKLRSLGMLKDMEKKWFQKLDSLNVHSNTEEVA 753

  Fly   806 HEVDGDELS----IIELGGVFLVLAGGVLIGVILGIFEFLWNVQNVAVEERVTPWQAF 859
            ...|.||.|    ..||.|:|::.....::.:.|.:|.....|..:.     |..|:|
plant   754 STNDDDEASKRFTFRELRGLFIIAGAAHVLVLALHLFHTRQEVSRLC-----TKLQSF 806

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 76/442 (17%)
ANF_receptor 46..386 CDD:279440 70/402 (17%)
PBP2_iGluR_Kainate 426..796 CDD:270432 82/395 (21%)
Lig_chan 556..828 CDD:278489 59/302 (20%)
GLR1.1NP_187061.1 PBP1_GABAb_receptor 31..397 CDD:107361 73/426 (17%)
ANF_receptor 45..377 CDD:279440 67/378 (18%)
Periplasmic_Binding_Protein_Type_2 421..737 CDD:304360 85/413 (21%)
Lig_chan 542..781 CDD:278489 59/303 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1813
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.920

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