DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIA and grin3ba

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:1021 Identity:223/1021 - (21%)
Similarity:390/1021 - (38%) Gaps:226/1021 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ITVGAIF-YENEKEIELSFDQAF----REVNNMKFSELRFVTIKRYMPTNDSFLLQQITC-ELIS 90
            :.:||:. ...:..|:.:.::|.    :..||.....|....:.|.....|...:.:..| :::.
Zfish    44 VRLGALLPTRQQSRIQGALNRALVHLRQSGNNFLPYNLSLEVLSREPLNGDPESMFRCVCQDIVV 108

  Fly    91 NGVAAIFG-PSSKAASDIVAQIANATGIPHIEYDLKLEATR-QEQLNHQMSINVAPS-LSVLSRA 152
            .||:|:.. |.|......|..:::...||.|....:.|..: |.:.:.||...:.|| ||.|..|
Zfish   109 QGVSAVLAFPQSHEELIQVEFMSSFLEIPFISIIEQGEPLKTQNRFHLQMMTRMPPSGLSDLLLA 173

  Fly   153 YFEIIKSNYEWRTFTLIYETPEG--LARLQDLMNIQALNSD--------YVKLRNLADYADDYRI 207
            .  :::..::....|:   .|.|  ...|::|.....|..|        .:.|..|.:...:.::
Zfish   174 V--LLRGGWQGGAATV---CPGGGNTGMLEELQQRGHLGLDGAHWHLWETLNLSRLEENISEDKV 233

  Fly   208 ------LWKETDETFHEQRIILDCEPKTLKELLKVSIDFKLQG--PFRNWFLTH---LDTHNS-- 259
                  |...|........::...:|:....:|..:  .:|.|  |..:|.:.:   ||:.:|  
Zfish   234 MELLSQLLSRTPSAPASSVVLFGSDPECTATVLHCA--HQLSGTLPPMHWIMGYPLSLDSLHSIG 296

  Fly   260 ---GLRDIYNEDFKANITSVRLKVVDANP--FERKKTRLTKVDQILGNQTMLPILIYDAVVLFAS 319
               ||. .|.|             |:..|  |..:.|.     |::|.           .|..|:
Zfish   297 SPLGLM-AYGE-------------VNRKPLNFYIRDTL-----QLIGR-----------AVYAAT 331

  Fly   320 SARNVIAAMQP----FHPPNRHCGSSSPWMLGAFIVNEMKT--ISEDDVEPHFKTENMKLDEYGQ 378
            ..|..:|.:|.    |..||:|...||...|..|:.|...|  .....||..|.....     .|
Zfish   332 MVRPDLALIQNMVNCFDKPNKHELPSSGQYLARFLSNTSFTGLTGPVRVERSFSRVLT-----SQ 391

  Fly   379 RIHFNLEIYKPTVNEPMMV----WTPDNGIKKRLLNLELESAGTTQDFSEQRKV----------- 428
            |.|. ..:.:..:.:|..|    |  .:|      .||||..|.....::.::.           
Zfish   392 RFHI-WSLQRDPLGQPSWVTVASW--QSG------RLELEEQGLWPGVTQHQREDGPGIRLGGRW 447

  Fly   429 ----------YTVVTHYEEPYFMMKE-DHEN----------------------FRGREKYE---- 456
                      ..|||..|.|:...:| |.|.                      ||..|:..    
Zfish   448 QAGLPVAGSRLRVVTLVEHPFVFTREVDEEGQCPAGQLCLDPQTNNSEVLNQLFRELEQTNSSSL 512

  Fly   457 ---------GYAVDLISKLSELMEFDYEFMIVNGNGKYNP-ETKQWDGIIRKLIDHHAQIGVCDL 511
                     ||.:||:.||:|.|.|:::..|| |:|||.. :..:|.|::..|:...|.:.|...
Zfish   513 PTDMRKCCYGYCIDLLEKLAEDMHFEFDLYIV-GDGKYGAWKGGRWSGLVGDLLSGVADMAVTSF 576

  Fly   512 TITQMRRSVVDFTVPFMQLGISIL-HYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAFVFI 575
            :|...|..|:|||.||....:.|| ..|....|..  ||:.|....:|: .||..|.:|..|:  
Zfish   577 SINSARSRVIDFTSPFFSTSLGILVRSKDTAAPIG--AFMWPLHWSMWV-GIFVALHITALFI-- 636

  Fly   576 ARLSYREWLPPNPAIQDPDELENIWNVNNSTWLMVGSIMQQGCDILPRGPHM---RILTGMWWFF 637
               :..||  .:|....|.....|...:.|:.|.:...:..|..:..:.|..   |.|..:|..|
Zfish   637 ---TLYEW--NSPFGMTPHGRNRIRVFSYSSALNLCYAILFGRTVASKTPKCWTGRFLMNLWAIF 696

  Fly   638 ALMMLSTYTANLAAFLTSNKWQSSIKSLQDLIEQDKVH-------FGSMRGGSTSLFFSESNDTD 695
            .|::||:|||||||.:...|....:..:.|:    |:|       ||::|         ||:..|
Zfish   697 CLLVLSSYTANLAAVMVGEKTFEEVSGIHDV----KLHHPSLGFRFGTVR---------ESSAED 748

  Fly   696 Y-QRAWNQMKDFNPSAFTSTNKEGVARVRKEKGGY-AFLMETTSLTY--NIERNCDLTQIGEQIG 756
            | ::::.:|.::.......|..:||:.::.:.... ||:|:...|.|  :|:.:|.|..:|:...
Zfish   749 YVKKSFPEMHEYMRRFNKPTTPDGVSTLKTDPPQLDAFIMDKALLDYEVSIDADCKLLTVGKPFA 813

  Fly   757 EKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKWWKNHNVTCDS--YHEVDGDELSIIELG 819
            .:.||:.:|..|....|:|..:.:....|.:..:.:||:|  .|.|..  :...:..::.|....
Zfish   814 IEGYGIGLPQNSPLTRNVSEYVSRYKSDGYMDMLHDKWYK--VVPCGKRVFAVTETLQMGIQHFS 876

  Fly   820 GVFLVLAGGVLIGVIL------GIFEFLWNVQNVAVEERVTPWQAFKAELIFALKFWVRKKPMRI 878
            |:|::|..|| .|.:|      ..|.|:  :.::..::|...|.....::..|:......:....
Zfish   877 GLFVLLCVGV-AGALLTLLGEHAFFRFI--LPHLRHQQRFKYWLHTSQKIHRAINMGCDDERKSE 938

  Fly   879 SSSSDK------------------SSSRRSSGSRRSSKEKSRSKTV 906
            :.|||:                  |||..|:.|..::..|..:::|
Zfish   939 AESSDRCPTLCLSENCNLHRLPPSSSSPPSTSSTSTTTTKWNNQSV 984

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 83/417 (20%)
ANF_receptor 46..386 CDD:279440 77/381 (20%)
PBP2_iGluR_Kainate 426..796 CDD:270432 108/442 (24%)
Lig_chan 556..828 CDD:278489 69/287 (24%)
grin3baXP_021323058.1 Periplasmic_Binding_Protein_Type_1 26..428 CDD:324556 89/434 (21%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 107/418 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591053
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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