DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIA and grik1b

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_690040.5 Gene:grik1b / 561540 ZFINID:ZDB-GENE-070821-1 Length:906 Species:Danio rerio


Alignment Length:899 Identity:289/899 - (32%)
Similarity:461/899 - (51%) Gaps:107/899 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 AFIIIIGFLEGIIALGGDDRNEITVGAIFYENEKE----IELSFDQAFREVNNMKFSELRFVTIK 70
            :||::....|    :|...:..:.:|.||...|.|    .||:|..|...:|..          :
Zfish    46 SFILLCLMAE----VGLSAQQVLRIGGIFETLENEPISVEELAFKFAVTNINRN----------R 96

  Fly    71 RYMPTN------------DSFLLQQITCELISNGVAAIFGPSSKAASDIVAQIANATGIPHIEYD 123
            ..||..            |||...:..|:.::.||||:||||..::...|..|.||..:|||:..
Zfish    97 TLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAAVFGPSHSSSVSAVQSICNALEVPHIQTR 161

  Fly   124 LKLEATRQEQLNHQMSINVAPSLSVLSRAYFEIIKSNYEWRTFTLIYETPEGLARLQDLMNIQAL 188
            .|..:...:.   ...||:.|..:.:|||..:|::. |:|:..|::||...||.|||:|:...:.
Zfish   162 WKHPSVDNKD---SFYINLYPDYASISRAVLDIVQF-YKWKAVTVVYEDATGLIRLQELIKAPSR 222

  Fly   189 NSDYVKLRNLADYADDYRILWKETDETFHEQRIILDCEPKTLKELLKVSIDFKLQGPFRNWFLTH 253
            .|..:|:|.|...:.|.|.|.||..:. .|..:|.||..:|..::||..:...:...:.::|.|.
Zfish   223 YSIKIKIRQLPTGSKDARPLLKEMKKG-KEFCVIFDCSYQTAADVLKQLLSMGMMTEYYHFFFTT 286

  Fly   254 LDTHNSGLRDIYNEDFK---ANITSVRLKVVDANPFERKKTRLTKVDQIL-----------GNQT 304
            ||.::..|     |.|:   .|:|..||..:| ||..........::::.           |..|
Zfish   287 LDLYSLDL-----EPFRYSGVNMTGFRLLNID-NPQVASVVEKWSMERLQAPPKPETGLQDGMMT 345

  Fly   305 MLPILIYDAVVLFASSARN----VIAAMQPFHPPNRHCGSSSPWMLGAFIVNEMKTISEDDVEPH 365
            ....|:||||.:.|::::.    .::::|        |....||..|:..::..|....:.:...
Zfish   346 TEAALMYDAVYMVAAASQRASQITVSSLQ--------CHRHKPWRFGSRFISMFKEAQWNGLTGQ 402

  Fly   366 F---KTENMKLDEYGQRIHFNLEIY--------KP-------TVNEPMMVWTPDNGIKKRLLNL- 411
            .   ||:.::.|       |:|:|.        ||       .|.:.:.||..:.|     ||| 
Zfish   403 IIINKTDGLRKD-------FDLDIISLKEDGLEKPLESGRFNKVWKKIGVWNSNTG-----LNLT 455

  Fly   412 -ELESAGTTQDFSEQRKVYTVVTHYEEPYFMMKEDHENFRGREKYEGYAVDLISKLSELMEFDYE 475
             ..:...|....|...:...|.|..|.||.|.|:..:...|.:::|||.:||:.:||.::.|.||
Zfish   456 DSNKDKNTNVTDSMANRTLIVTTILENPYVMYKKSDKPLYGNDRFEGYCLDLLKELSNILGFSYE 520

  Fly   476 FMIVNGNGKYNPETK--QWDGIIRKLIDHHAQIGVCDLTITQMRRSVVDFTVPFMQLGISILHYK 538
            ..:|. :|||..:..  :|:|::|:||||.|.:.|..||||.:|..|:||:.|||.||||||::|
Zfish   521 VKLVT-DGKYGAQNDKGEWNGMVRELIDHVADLAVAPLTITYVREKVIDFSKPFMTLGISILYHK 584

  Fly   539 SPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAFVFIARLSYREWLPPNPAIQDPDELENIWNVN 603
            ........|:||.|.:.::|:|::.|.|.::.....|||.:..||..|:|...|.|.:||.:.:.
Zfish   585 PNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLI 649

  Fly   604 NSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSNKWQSSIKSLQDL 668
            ||.|..||::||||.:::|:....||:.|:||||.|:::|:||||||||||..:..|.|.|..||
Zfish   650 NSVWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMDSPIDSADDL 714

  Fly   669 IEQDKVHFGSMRGGSTSLFFSESNDTDYQRAWNQMKDFNPSAFTSTNKEGVARVRKEKGGYAFLM 733
            .:|.|:.:|::|.|||..||.:|..:.|::.|..|.....:|....|:||:.||...  .||.||
Zfish   715 AKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRKNTALVKNNREGIQRVLTT--DYALLM 777

  Fly   734 ETTSLTYNIERNCDLTQIGEQIGEKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKWWKNH 798
            |:||:.|..:|||:|||||..|..|.||:..|:||.||..::::||||.|.|:|..||.|||:.:
Zfish   778 ESTSIEYISQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKVTIAILQLQEEGKLHMMKEKWWRGN 842

  Fly   799 NVTCDSYHEVDGDELSIIELGGVFLVLAGGVLIGVILGIFEFLW-NVQNVAVEE 851
            .  |......:...|.:..:||:|:|||.|:::.|.:.|.||:: :.:|:.:||
Zfish   843 G--CPEEDSKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFIYKSRKNLDIEE 894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 105/422 (25%)
ANF_receptor 46..386 CDD:279440 94/372 (25%)
PBP2_iGluR_Kainate 426..796 CDD:270432 157/371 (42%)
Lig_chan 556..828 CDD:278489 113/271 (42%)
grik1bXP_690040.5 Periplasmic_Binding_Protein_Type_1 62..455 CDD:299141 108/433 (25%)
ANF_receptor 80..423 CDD:279440 95/378 (25%)
Periplasmic_Binding_Protein_Type_2 471..840 CDD:304360 157/371 (42%)
Lig_chan 602..871 CDD:278489 113/272 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591024
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.750

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