DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIA and grik2

DIOPT Version :9

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_021322472.1 Gene:grik2 / 556013 ZFINID:ZDB-GENE-080414-1 Length:908 Species:Danio rerio


Alignment Length:940 Identity:294/940 - (31%)
Similarity:473/940 - (50%) Gaps:118/940 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 IIIIGFLEGIIALGGDDRNEITVGAIFYENEK----EIELSFDQAFREVNN----MKFSELRFVT 68
            ::.:|:..|:       .:.:..|.||...|.    ..||:|..|...:|.    :..:.|.: .
Zfish    23 LLCVGYSHGM-------PHVLRFGGIFESIESGPSGAEELAFKFALNTINRNRTLLPNTTLTY-D 79

  Fly    69 IKRYMPTNDSFLLQQITCELISNGVAAIFGPSSKAASDIVAQIANATGIPHIEYDLKLEATRQEQ 133
            |:| :..:|||...:..|:.:|.|||||||||..::::.|..|.||.|:|||          |.:
Zfish    80 IQR-INIHDSFEASRKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHI----------QTK 133

  Fly   134 LNHQMS-------INVAPSLSVLSRAYFEIIKSNYEWRTFTLIYETPEGLARLQDLMNIQALNSD 191
            ..||:|       :|:.|..|.||||..:::.. ::|:|.|::|:...||.|||:|:...:..:.
Zfish   134 WKHQVSDNRDSFYVNLYPDFSSLSRAILDLVHF-FKWKTVTVVYDDSTGLIRLQELIKAPSRYNI 197

  Fly   192 YVKLRNLADYADDYRILWKE--TDETFHEQRIILDCEPKTLKELLKVSIDFKLQGPFRNWFLTHL 254
            .:|:|.|.....|.:.|.||  ..:.||   :|.||..:....:||.::...:...:.::..|.|
Zfish   198 RLKIRQLPADTKDAKPLLKEMKRGKEFH---VIFDCGHEMAAGILKQALAMGMMTEYYHYIFTTL 259

  Fly   255 DTHNSGLRDIYNEDFKANITSVRLKVVDANPFERKKTRLTKVDQIL------------------- 300
            |.            |..::...|...|:...|....|..::|..|:                   
Zfish   260 DL------------FALDVEPYRYSGVNMTGFRILNTENSQVSSIIEKWSMERLQAPPKPDSGLL 312

  Fly   301 -GNQTMLPILIYDAV----VLFASSARNVIAAMQPFHPPNRHCGSSSPWMLGAFIVNEMKTISED 360
             |..|....|:||||    |....|.:..::::|        |....||..|...:..:|....|
Zfish   313 DGFMTTDAALMYDAVHVVAVAVQQSPQITVSSLQ--------CNRHKPWRFGNRFMTLIKEAHWD 369

  Fly   361 DV--EPHFKTENMKLDEYGQRIHFNLEI--YKPTVNEPMMVWTPDNGIKKRLLNLELESAGTTQD 421
            .:  ..:|...|      |.|..|:|::  .|....|.:..|.|.:|     ||:.....|.|.:
Zfish   370 GLTGRINFNRTN------GLRTDFDLDVISLKEEGLEKIGTWDPASG-----LNMTENQKGKTAN 423

  Fly   422 FSE--QRKVYTVVTHYEEPYFMMKEDHENFRGREKYEGYAVDLISKLSELMEFDYEFMIVNGNGK 484
            .::  ..:...|.|..||||.|.|:..:...|.:::|||.|||:.:|:.::.|.||..:|. :|:
Zfish   424 VTDSLSNRSLVVSTILEEPYVMFKKSDKPLYGNDRFEGYCVDLLRELAAILGFGYELRLVE-DGR 487

  Fly   485 YNPETK---QWDGIIRKLIDHHAQIGVCDLTITQMRRSVVDFTVPFMQLGISILHYKSPPEPKNQ 546
            |..:.:   ||:|::|:|:||.|.:.|..|.||.:|..|:||:.|||.||||||:.|........
Zfish   488 YGAQDESSGQWNGMVRELMDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGV 552

  Fly   547 FAFLEPFAVEVWIYMIFAQLIMTLAFVFIARLSYREWLPPNPAIQDPDELENIWNVNNSTWLMVG 611
            |:||.|.:.::|:|::.|.|.::.....|||.|..||..|:|...|.|.:||.:.:.||.|..||
Zfish   553 FSFLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVG 617

  Fly   612 SIMQQGCDILPRGPHMRILTGMWWFFALMMLSTYTANLAAFLTSNKWQSSIKSLQDLIEQDKVHF 676
            ::||||.:::|:....||:.|:||||.|:::|:||||||||||..:.:|.|.|..||.:|.|:.:
Zfish   618 ALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEY 682

  Fly   677 GSMRGGSTSLFFSESNDTDYQRAWNQMKDFNPSAFTSTNKEGVARVRKEKGGYAFLMETTSLTYN 741
            |.:..|||..||.::..:.|.:.|..|.....|....:.:||:.||.  ...||||||:|::.:.
Zfish   683 GVVEDGSTMTFFKKTKISTYDKMWEFMSSRRHSVMVKSIEEGIERVL--TSDYAFLMESTTIEFV 745

  Fly   742 IERNCDLTQIGEQIGEKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKWWKNHNVTCDSYH 806
            .:|||:|||||..|..|.||:..|:||.||..::::||||.|.|:|..||.|||:.:.  |....
Zfish   746 TQRNCNLTQIGGLIDSKAYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG--CPEEE 808

  Fly   807 EVDGDELSIIELGGVFLVLAGGVLIGVILGIFEFLW-NVQNVAVEERVTPWQAFKAELIFALKFW 870
            ..:...|.:..:||:|:|||.|:::.|.:.:.|||: :.||..:|:| :...|...||..:||..
Zfish   809 NKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKQNAQLEKR-SFCSAMVDELRVSLKCQ 872

  Fly   871 VRKK-----PMRISSSSDKSSSRRSSGSRR 895
            .|.|     |:.:  .:|:..:..:...||
Zfish   873 RRLKHKPQPPVMV--KTDEVINMHTFNDRR 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 105/415 (25%)
ANF_receptor 46..386 CDD:279440 97/378 (26%)
PBP2_iGluR_Kainate 426..796 CDD:270432 153/372 (41%)
Lig_chan 556..828 CDD:278489 110/271 (41%)
grik2XP_021322472.1 PBP1_iGluR_Kainate 37..414 CDD:380605 108/423 (26%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:419667 153/372 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591071
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.750

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