DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIA and Ir75a

DIOPT Version :10

Sequence 1:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster


Alignment Length:466 Identity:94/466 - (20%)
Similarity:187/466 - (40%) Gaps:105/466 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   427 KVYTVVTHYEEPY---------FMMKEDHENFRGREKYEGYAVDLISKLSELMEFDYEFMIVNGN 482
            :|.||||  :.|.         |:.:|:..:.....:: |:.:.||  |.:|:....:|:.    
  Fly   207 RVATVVT--QRPLTLSDDELIRFLSQENDTHIDSLARF-GFHLTLI--LRDLLHCKMKFIF---- 262

  Fly   483 GKYNPETKQWD------GIIRKLIDHHAQIGVCDLTITQMRRSVVDFTVPFMQLGI--SILHYKS 539
                  :..|.      |.:..::|..|.:.......|:.|   :.:....::.|.  |:..:::
  Fly   263 ------SDSWSKSDVVGGSVGAVVDQTADLTATPSLATEGR---LKYLSAIIETGFFRSVCIFRT 318

  Fly   540 PPEP-KNQFAFLEPFAVEVWIYMIFAQL-----IMTLAFVFIARLSYREWLPPNPAIQDPDELEN 598
            |... .....||:||:..|| |:....|     ::.:.|....:...:.|           .|:.
  Fly   319 PHNAGLRGDVFLQPFSPLVW-YLFGGVLSLIGVLLWITFYMECKRMQKRW-----------RLDY 371

  Fly   599 IWNVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLS-----TYTANLAAFLTSNKW 658
            :.::.::..:..|:...|...::||....|::     :|||.::|     .||:.:.:.|.|:..
  Fly   372 LPSLLSTFLISFGAACIQSSSLIPRSAGGRLI-----YFALFLISFIMYNYYTSVVVSSLLSSPV 431

  Fly   659 QSSIKSLQDLIEQD-----------KVHFGSMRGGSTSLFFSESNDTDYQRAWNQMKDFNPSAFT 712
            :|.||:::.|.|..           |.:....|.....||.....::..|         ||..:.
  Fly   432 KSKIKTMRQLAESSLTVGLEPLPFTKSYLNYSRLPEIHLFIKRKIESQTQ---------NPELWL 487

  Fly   713 STNKEGVARVRKEKGGYAFLMETTSLTYNIERN------CDLTQI---GEQIGEKHYGLAVPLGS 768
            .. ::||.||| :..||.::.||:|....:||.      |||.::   .||:...|    :...|
  Fly   488 PA-EQGVLRVR-DNPGYVYVFETSSGYAYVERYFTAQEICDLNEVLFRPEQLFYTH----LHRNS 546

  Fly   769 DYRTNLSVSILQLSERGELQKMKNKW--WKNHNVTCDSYHEVDGDELSIIELGGVFLVLAGGVLI 831
            .|:....:..|::.|.|..:|.::.|  .|.|.|..:....|..:.::.:    :.:::...:|:
  Fly   547 TYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNFVITVGMEYVAPL----LLMLICADILV 607

  Fly   832 GVILGIFEFLW 842
            .||| :.|..|
  Fly   608 VVIL-LVELAW 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..405 CDD:380605
PBP2_iGluR_Kainate 426..796 CDD:270432 84/418 (20%)
Lig_chan 555..828 CDD:459656 61/304 (20%)
Ir75aNP_649012.2 Periplasmic_Binding_Protein_Type_2 455..572 CDD:473866 31/131 (24%)
Blue background indicates that the domain is not in the aligned region.

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